G1155416


Basic Information

Item Value
gene id G1155416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22836228 ~ 22837546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317689
TCATTTGAACATTCTGTCATAATGAGCGcgtgttcaacttaataaaaaacaAGTTTTCTTATCtcaaaaaggttaaataaattttaaaaaacgaTTATAGTAAGggcctattaagtgccaaataaagtaacaggcttgactgtaacagggttgacgatttcacCTTAAATTAGCCATGAATCCCCTTGTGACAAgtggaatggaagcttgttgtgtacaACATGTAGGGGCAATTAAACGCAAGCGTCATCCCAAAAAACTTAAGTGTCAAAATATTTCTAGCCTATCTATGAGTTAGAGGGTTGACGTGTCATGCTCGACCCACTCAATTATCCATAACACAACACCAGAAAATAGCCAAAAAGAGTGGAACCAACCCGCCTGCTTTTCCAGAGGATTGAATCGGTcacattctaaatgtaatccgtcaGTTACTAGTTACTTGTCCAAAATTCTAATCAGTAAAGTAATTTATGGATTACCTTAGCTCAGTAACATCAtttgattactttcagttacttctgaattactttccccttaagaggcatcaGCAGAAGACAAAAATGGATCcatcaaatgtattttgtgtgtcatcactcgctcaggtggaacaaagtTATGCTGCGTTTGTAACCAAGTGAGAAGAGCGAATTTACCACATCGACTGGGAAAAACCCACTTTAACGACCTTCCAACTGgtatttacgacttcacaactggtaaattcCTACCTCCCACTTGGTTACAAAGCAGCAATTCacttgcaccttttttcaatgctgaattgaatgtcattgagaaaacagaaaggtgtcataacgtatttttttccccctgcaAACgccctttctgaatttaaaagtaatcaacAAAAATGATTATTCTAGTCTTTCAAAAGTATCTGTTATCTGATTAAAAATATTTTTGCTGGCAGCTAACCGATTACAGTTCTTTTTTTTGTATTCAGATTACATGTTACTACCCAGCCCTGCATTAACACTATTATTTAACTATTAGATGTTCACTGTTTCTTTTAGTCAAAAAATATTTAAACAGGAATAGTTTTACCATCTTAAAACAagagttcagttcatgtaacagggttgaccttaaaatgaggcaCAGATTCCTTAAAacgaatcactaatcacatgaaataaataatcatcttcaaaatgactgaaggctttacaatgatggtgtaTACTTGGATATATtttggggttaagtgggttacAAACTTCCTGGAAGTCACAGAGGATGCGTGGAGGGATATTTGAAAATGCTGGATTTTGGCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317689 True 1298 lncRNA 0.36 2 22836228 22837546

Neighbor

gene id symbol gene type direction distance location
LOC110485973 LOC106588447 coding downstream 1585 22766301 ~ 22834643 (-)
ccdc40 ccdc40 coding downstream 70073 22754475 ~ 22766155 (-)
LOC110485971 LOC106588435 coding downstream 90929 22728553 ~ 22745299 (-)
LOC110485970 LOC106588430 coding downstream 203864 22627746 ~ 22632364 (-)
LOC110485969 cbx8 coding downstream 220149 22612185 ~ 22623151 (-)
LOC110485111 LOC106588440 coding upstream 439 22837985 ~ 22838908 (-)
LOC110485974 LOC106585623 coding upstream 78068 22915614 ~ 22993515 (-)
LOC110485975 apoh coding upstream 227876 23065422 ~ 23070647 (-)
LOC110485976 LOC106585643 coding upstream 233460 23071006 ~ 23077109 (-)
LOC110485982 LOC106567469 coding upstream 379518 23216183 ~ 23220256 (-)
G1155415 NA non-coding downstream 1199 22834670 ~ 22835029 (-)
G1155390 NA non-coding downstream 82713 22752953 ~ 22753515 (-)
G1155386 NA non-coding downstream 87000 22749021 ~ 22749228 (-)
G1155370 NA non-coding downstream 127719 22708184 ~ 22708509 (-)
G1155423 NA non-coding upstream 14314 22851860 ~ 22852155 (-)
G1155426 NA non-coding upstream 17023 22854569 ~ 22854898 (-)
G1155427 NA non-coding upstream 17645 22855191 ~ 22855495 (-)
G1155434 NA non-coding upstream 26903 22864449 ~ 22864889 (-)
G1155435 NA non-coding upstream 28741 22866287 ~ 22866558 (-)
si:ch211-214c7.4 LOC106588372 other downstream 372553 22462260 ~ 22502075 (-)
LOC110485947 LOC106588570 other downstream 762803 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 1370962 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1575585 21247188 ~ 21260739 (-)
G1153336 NA other downstream 1848455 20984731 ~ 20987773 (-)
G1155674 NA other upstream 388668 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 564833 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 761961 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 869211 23699036 ~ 23707634 (-)

Expression


Co-expression Network