G1154992


Basic Information

Item Value
gene id G1154992
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22940287 ~ 22940514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317217
GGCTTCCCTTTGAACAGGCTCTGTGATGGTTCCCCTCTCAATTAGCTCATTGTCCACTTCAGCTGGGGGGGTTACTCTCTGCTGGCTCCCTTTGAAGTGATTATCCCTTTATCTCGAGCCTGACCGAGGAGTAATATCTGGAggacaatggaaaatgaaagcCCATATGTAGAAGAGCGTGAACGTCTGTTTATATAGGGCCACAAGagtgaaaaagagaaagaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317217 True 228 lncRNA 0.46 1 22940287 22940514

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 329916 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 344014 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 371479 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 398041 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 483283 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 140149 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 389720 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 426691 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 461882 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 571192 23511706 ~ 23591433 (+)
G1154973 NA non-coding upstream 29979 22909916 ~ 22910308 (+)
G1154970 NA non-coding upstream 36474 22903611 ~ 22903813 (+)
G1154968 NA non-coding upstream 37743 22902312 ~ 22902544 (+)
G1154954 NA non-coding upstream 75390 22864459 ~ 22864897 (+)
G1154951 NA non-coding upstream 82144 22857915 ~ 22858143 (+)
G1154995 NA non-coding downstream 2079 22942593 ~ 22942806 (+)
G1155004 NA non-coding downstream 13656 22954170 ~ 22954409 (+)
G1155008 NA non-coding downstream 21497 22962011 ~ 22962337 (+)
G1155010 NA non-coding downstream 23495 22964009 ~ 22964245 (+)
G1155012 NA non-coding downstream 25350 22965864 ~ 22966067 (+)
G1154412 mcoln1 other upstream 428547 22511379 ~ 22511740 (+)
G1154335 NA other upstream 483938 22439636 ~ 22456349 (+)
G1154234 NA other upstream 780858 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 1331458 21607492 ~ 21608829 (+)
G1155006 LOC100136012 other downstream 18418 22958932 ~ 22959351 (+)
LOC110485992 LOC106585723 other downstream 655404 23595876 ~ 23608606 (+)
G1156089 NA other downstream 1058132 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1386269 24326783 ~ 24328963 (+)

Expression


Co-expression Network