G1155006 (LOC100136012)


Basic Information

Item Value
gene id G1155006
gene name LOC100136012
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22958932 ~ 22959351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317231
attgtagacctgcacaaggctgggatgggctacaggacaatgggcaagcagcttggtgagaaggcaacaacttttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcagtctggggctccatgcaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacagcagcacctggtcaatgacctgaagagagctgggaccacagtctcaaataaaaccattagtaacacactacgcggtcatggattaaaatcctgcagtgcacgcaaggtccccctgctcaagccagcgcaagTCCAGGctcatctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtcatgtggtctgatgag

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317231 True 420 TUCP 0.50 1 22958932 22959351

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 348561 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 362659 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 390124 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 416686 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 501928 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 121312 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 370883 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 407854 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 443045 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 552355 23511706 ~ 23591433 (+)
G1155004 NA non-coding upstream 4523 22954170 ~ 22954409 (+)
G1154995 NA non-coding upstream 16126 22942593 ~ 22942806 (+)
G1154992 NA non-coding upstream 18418 22940287 ~ 22940514 (+)
G1154973 NA non-coding upstream 48624 22909916 ~ 22910308 (+)
G1154970 NA non-coding upstream 55119 22903611 ~ 22903813 (+)
G1155008 NA non-coding downstream 2660 22962011 ~ 22962337 (+)
G1155010 NA non-coding downstream 4658 22964009 ~ 22964245 (+)
G1155012 NA non-coding downstream 6513 22965864 ~ 22966067 (+)
G1155017 NA non-coding downstream 22879 22982230 ~ 22982430 (+)
G1155018 NA non-coding downstream 23241 22982592 ~ 22982900 (+)
G1154412 mcoln1 other upstream 447192 22511379 ~ 22511740 (+)
G1154335 NA other upstream 502583 22439636 ~ 22456349 (+)
G1154234 NA other upstream 799503 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 1350103 21607492 ~ 21608829 (+)
LOC110485992 LOC106585723 other downstream 636567 23595876 ~ 23608606 (+)
G1156089 NA other downstream 1039295 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1367432 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1804751 24764102 ~ 24764346 (+)

Expression


Co-expression Network