G1155008


Basic Information

Item Value
gene id G1155008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22962011 ~ 22962337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317233
ttatggtgtgggcaggcataagctacggacaatgaactcaattgcattttatcgatggcaatttgaatgcacagagatactgtgaagagatcctgaggcccattgctacgccattcatccaccgccatcaccatgtttcagcatgacaatgcacgccccatgtcacaaggatctgtacacaattcctggaagctgaaaatgtctcagttcttccatggcctgcatactcaccagacatgtcacccattgagcatgtttgggaagcTCTGGATCggcgtgtacgacagcgtgttcaagttcctgccaatatccagcgaCTTCGCACAG

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317233 True 327 lncRNA 0.49 1 22962011 22962337

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 351640 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 365738 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 393203 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 419765 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 505007 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 118326 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 367897 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 404868 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 440059 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 549369 23511706 ~ 23591433 (+)
G1155004 NA non-coding upstream 7602 22954170 ~ 22954409 (+)
G1154995 NA non-coding upstream 19205 22942593 ~ 22942806 (+)
G1154992 NA non-coding upstream 21497 22940287 ~ 22940514 (+)
G1154973 NA non-coding upstream 51703 22909916 ~ 22910308 (+)
G1154970 NA non-coding upstream 58198 22903611 ~ 22903813 (+)
G1155010 NA non-coding downstream 1672 22964009 ~ 22964245 (+)
G1155012 NA non-coding downstream 3527 22965864 ~ 22966067 (+)
G1155017 NA non-coding downstream 19893 22982230 ~ 22982430 (+)
G1155018 NA non-coding downstream 20255 22982592 ~ 22982900 (+)
G1155021 apoh non-coding downstream 22348 22984685 ~ 23070622 (+)
G1155006 LOC100136012 other upstream 2660 22958932 ~ 22959351 (+)
G1154412 mcoln1 other upstream 450271 22511379 ~ 22511740 (+)
G1154335 NA other upstream 505662 22439636 ~ 22456349 (+)
G1154234 NA other upstream 802582 22158571 ~ 22159429 (+)
LOC110485992 LOC106585723 other downstream 633581 23595876 ~ 23608606 (+)
G1156089 NA other downstream 1036309 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1364446 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1801765 24764102 ~ 24764346 (+)

Expression


Co-expression Network