G1155021 (apoh)


Basic Information

Item Value
gene id G1155021
gene name apoh
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22984685 ~ 23070622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317251
tttttttacAAGCAAACAGTATATTTTATTCATCGTAAAATTAGTTCTCTACAGAAAAATGATTCCGAAGAACAAATGGATAGCATTACATAGAAATACACATGACATTTAATTCACAGGCAATCAATGTTCTTGGTCTCAATTTGCTTTGTCATGCATAGCGTTTCAGCACTGGGCTATCTCAGATGGCAGGGAATCAGAGTTGAATTGATATGAAATCCTAC
>TU1317252
tttttttacAAGCAAACAGTATATTTTATTCATCGTAAAATTAGTTCTCTACAGAAAAATGATTCCGAAGAACAAATGGATAGCATTACATAGAAATACACATGACATTTAATTCACAGGCAATCAATGTTCTTGGTCTCAATTTGCTTTGTCATGCATAGCGTTTCAGCACTGGGCTATCTCAGATGGCAGGGAATCAGAGTTGAATTGATATGAAATCCTACTTGGTTCTAGAAAGGAAAACACACAGACATCATGAAGACTTGATGGTTAATGTTTTATATAGAAAATAACCAACAAGAAAAAAATGCTTGCGCTCTAGTCTCACCTTCGAAGCATTCTGGGATCTTGAGTTTTCCATTGATGCATTGGGTTGACACTGCATAGCCACACTTCTTCTCCTCGTTCATACAATAGACCAAGACGACGTCCGCATGCGAGATTCTATTGGGCTCGAAATCCTCTATCCAAAATTTCTTTCCATTGTAAAGGATGCGTCCTCTTTTAATACCTACCTTGCAGGAAGCCCCTGCAAACTGGCTCCTTTGACCAATCCCCTGTTTTAAGACATTCAATCTCCACAGGCCCATCCAGGACATAGTCTACATTACATCCATATTTGACAGTCTCCTTGAAGCCGTACTCCCTCTTGTCAGTATTGGTCATGTAGCCGTTGCTGATGCCTGTTGGCGCTGAACAGGTCACCATTTACATTCTGGTGGCTCAGTCCAGTTTCCGTCAGTGCTGCACGATCCCCTCTCACTGCCTATGAGGACAAGTGGAGGGAAACACTCATAGGTCCCCCCAAAACCAAACACAACCGTTTCGCCTGTCAACTTTCTGTCGTAGACCATTTTCCCATATTTAGGTATTGGAGGAAGACCACACGTCACCGCTAACAGAGGGGAGAGATTTCATTCACATGCTCATTAAATCACTCACATTTGATTGAAATACgtgatattctctctctctctatatatatatatattttaaatcagaGACATACGATGTAACATATGAGTAGCATAGTCTACGGTAAAGCCATTATTCAAATCTCCGTTTTACACATCGTAGAATGCTCTTCACAGTTACAGCAATACGGCCACGTTTACATTGTGCTTATAGGCTTGCACGTATCAATGTGAGTTTGTATGCATTTATCAATGTGAGATCATGTTGAATCATTAGTGCTCAGTGCCAGAGCAGCTATGTATTTCAGTGGGAGGCAGACGCCTACGTGCGCACGTCGGTGGGGGATCACTCCATTGACCGTCGTACAAGCACTCAATGGTACTGGCTCCTTGCAGGGTATACCTGTAGACAACATTACCGTAATCTGTCAAATGAtgtactaaaaaaaaaaaaataacataaaGCACACACTATATTAGGTGTATGGGTATACAGTGATTTCAACTTTGACCTACTTCACGTGTGTTTGATACAATAACATGTTATCGACTTTGACAGCACGGAGAGGTGGCCAGTCGTCAACGAAACGCTAGAATGGAATTTGTAAATGCTATTCCCCATACCCCTCGTGGCAGGTGTAGTTGATGACACTCTGGTAGACAATGTCCACAAACTCCATGTCTCCATGGCCCAGCGCTTCTGGGAGAGAGCAACTCTTTACTGCATcagaagtttaaaaaaaagaaaaaagaaaaagagagtCAGTCAGCATTGCTCAACAGTTCCATCAATACGAGCATCAACTGATCATCATTGTAACATTGAGTATCAATTGATAATACTTGCAATATACTGAGCATCAATTGATAATATTTGCAATATACTGAGCATCAATTGATAATACTTGCAATATACTGAGCATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAATTGATAATACTTGCAATATAGTGAGTATCAACTGATacactgattttttttttttttttttgagtatCAAATGATGATACATGAGCAGCAATACTGTTTCAGGTCAAACTTTATAAAAACGTCCTACTTGAGCACGTGAGTCTAGACTTGGTCCAGCCTCCGCTAGCAGTGCAGCTGATTGTGCGAGAGCCTGAGGTGGGTGTGTACCCTCGTTTACACGACAGCGCCACCTCGTCTCCGGGGGAGTACACCCTCTGGAGCCCCTCCAGTTCCATACCGTCACCCAGGGGCGGGCGGCCACATTCTGAGGGGGCAGACAAGCAAAGGGACGggtcaataaacacacacacacacacacacaaaaaaacgtaTAGATTAACCAAAGAAGTGCCTGTGCAACTCCCCAGACATTCAGTTGACATTTTACGTAATGTCTAGTGATAGTTTGTTGAGCATAAGAAGGTAGGTGGACTATTCAAATAAAGTATATTTTTCCTTTCAGCTTACAGTAACTGAAAGTATTCGTCAACATGACACAAGCCCATTTGTCTCAACACACTCTGACAACATGCTCACTGAGAGTACGGAGGAATATTGAACAGCATACAGCGCAGAAACACAAAAGGCTTCTGAAATCAAGAGGTCAAAACACTGGAACACAAATGGAACAAAAAcacaaacgcaacatgtaaagtgttgcttCTATGTTTCATGAGTctttcatatgcacaaaaatcgTATTTCTCTGAAATGTATTGcactaatttgtttacatccctgttagtgagcatttgtcctttgccaagataatccatccacctgacaggtgtggcatatcaagaagctatcattacacaggtgcaccttatgctggggacaataaaaggccactctgaaatctgcagttttgtcacacaacataatgtcacagatgtctcaagttgagggagtgtgcaattgaatgttcatttctcttccATAAGCTGCTTCCAATGTcttttttagagaatttggcagtacatccaaccggcctcacaaccgcagaccacgtgtaaccatgccagcccaggaccgccACAACCAGCttattcacctgcgggatcgtctgagaccagccacccggacagctgattaaATTGTGGTTTTGCACAACCAAATCATTTCCGcacaaactgtctcagggaagctcatctgcatgctcgtcgtccttACCAGggccttgacctgactgcagttcggcatcgtaactgacttcagtgcgCAAaggctcaccttcgatggccactggcaagcTGGAGAAGTGTGCACTTCAAAAattaatcctggtttcaactgtaacgggcgtgtatggcgtcgtgcgGGCGAGCGGTTCGCTGATGTCAACGCTGTCAGAGTGGCccttggtggtggtggggttatggtatgggcaaccacaagctacggacaatgaacacaattgcattttatcgatgacaaTTTGAATACAAAGAGATAACGtggcgagatcctgaggcccattatcgtgccattcatctgccgtcatcacctcatgtttcagcatgatattgcacagccccatgttgcaaagATCTGTACAAAATACCTAGAAGCTAAAAATGCCCCAGTTCTttcatgacctgcatactcaccagacatgtcatccattgagcatgtttggaatgctctggatcgacatgtacgacaacatgttccagttcccgccagcaatatccagcaacttcacaaagCCATTGAAGAGGCATGGGACAACactccacaggccacaatcaacagcctgatcaaccctATTAGAAGGAAATGAcgctgccaatatccagcaacttcacaaagccattgaagaggcgtgggacaacattccacaatcaacagcctgagatggcgtcgcactgcatgaggcaaatggtggtcacacgcccatactattttttttaaaggtgttTGTGACCAGCACATCTGTGAAatgtcatgtgaaattcatagattaggacctaatgaatttatttcaattgactgatttccttacatgaactgtaactcagtttaaattgttgcatttatatttttgttcagtgtagagaCCGTAATAATAGATACTATACCTTTCTTGGTTGTCACTGGTGTATACAAGGCAAGCAGACAGATCAGCGGCAAAGACAGACTTGACAGTGCCATCGTCTGTGGTGTGGAGAGagcgtctctcctctctggtttcAAGGGTAAAAATCGGAATGTCGTTGGAGCTCCCAACTTTTTATGTTCGAGGTAATTGGAGAAGGGTCGATGACAACGCCGAATGAGGCAACCTCTGGCTCTTTTACTATTTACGTAATTTACCGTAAAGCACCAGACCTTTGTGAACCTTACTGTTGCCCCACCCCCATTCCTAGTACACATCACCAGTTTTCTGTAACTCTTCACCAAATCATGGTTGCCAGATCCATTTATGTGGTACAATAAAGTTGACTGAAGCTATTCTAGCAGTATAACATTGATGTGGCTAGATGACGCAGATCTACACACGCAGACCTACTAC
>TU1317250
TTTGGAAATTGAGTTTATACTGTATTGAGTAAGATGTTGGGTCAAGTCATCTACAAAGATACAAGCAAACAGTATATTTTATTCATCGTAAAATTAGTTCTCTACAGAAAAATGATTCCGAAGAACAAATGGATAGCATTACATAGAAATACACATGACATTTAATTCACAGGCAATCAATGTTCTTGGTCTCAATTTGCTTTGTCATGCATAGCGTTTCAGCACTGGGCTATCTCAGATGGCAGGGAATCAGAGTTGAATTGATATGAAATCCTACTTGGTTCTAGAAAGGAAAACACACAGACATCATGAAGACTTGATGGTTAATGTTTTATATAGAAAATAACCAACAAGAAAAAAATGCTTGCGCTCTAGTCTCACCTTCGAAGCATTCTGGGATCTTGAGTTTTCCATTGATGCATTGGGTTGACACTGCATAGCCACACTTCTTCTCCTCGTTCATACAATAGACCAAGACGACGTCCGCATGCGAGATTCTATTGGGCTCGAAATCCTCTATCCAAAATTTCTTTCCATTGTAAAGGATGCGTCCTCTTTTAATACCTACCTTGCAGGAAGCTGTGGAACAAAGAGTGAAATTAGGATCAATAATTATAGTATTGGCACAGGGAGCCAGGTGGATATTACTATTTAGAATttcaaaaaacggcaacattcaGCTATTCAAAAACACAGATTTGACAGGTTACCAAATAAGTTTGGTTAAACAAAATACAAAATTGTCACAAAATCAGTGGTCCTACCCCTGCAAACTGGCTCCTTTGACCAATCCCCTGTTTTAAGACATTCAATCTCCACAGGCCCATCCAGGACATAGTCTACATTACATCCATATTTGACAGTCTCCTTGAAGCCGTACTCCCTCTTGTCAGTATTGGTCATGTAGCCGTTGCTGATGCCTGTTGGCGCTGAACAGGTCACCACTGGAAACAAACAGAGGTCAATCAGGGTTAGTGTGTGTTCAGAATACCACTTTAACTTTGTCCACAAAGCAAATCACTTGTCATTTATTACCACACGAAAAGGTGCAATttgtatttcatttcatttcccCAGAGGTATCACAGACATATCTGGCcaaaactaaaacaaacaaacgGTTACACGAGCCAATAACCATCCCCCTCAGCTTACAAAAGTTCACGCTGCTCAGCAATAAAAATAaagatgttttattgtcacatacagcGCTCCTGGAGCaagttagggttaagtgccttgctcaagggcacatcgacagatttttcaccttgttggcttgggtattcaaaccagcgaccatttggctactggcccaacaccctaacccaggGATGGGCAACAATACAACAGATTAGAGCCTTTGACTGATAACACTGTACCTACATTTACATTCTGGTGGCTCAGTCCAGTTTCCGTCAGTGCTGCACGATCCCCTCTCACTGCCTATGAGGACAAGTGGAGGGAAACACTCATAGGTCCCCCCAAAACCAAACACAACCGTTTCGCCTGTCAACTTTCTGTCGTAGACCATTTTCCCATATTTAGGTATTGGAGGAAGACCACACGTCACCGCTAACAGAGGGGAGAGATTTCATTCACATGCTCATTAAATCACTCACATTTGATTGAAATACgtgatattctctctctctctatatatatatatattttaaatcagaGACATACGATGTAACATATGAGTAGCATAGTCTACGGTAAAGCCATTATTCAAATCTCCGTTTTACACATCGTAGAATGCTCTTCACAGTTACAGCAATACGGCCACGTTTACATTGTGCTTATAGGCTTGCACGTATCAATGTGAGTTTGTATGCATTTATCAATGTGAGATCATGTTGAATCATTAGTGCTCAGTGCCAGAGCAGCTATGTATTTCAGTGGGAGGCAGACGCCTACGTGCGCACGTCGGTGGGGGATCACTCCATTGACCGTCGTACAAGCACTCAATGGTACTGGCTCCTTGCAGGGTATACCTGTAGACAACATTACCGTAATCTGTCAAATGAtgtactaaaaaaaaaaaaataacataaaGCACACACTATATTAGGTGTATGGGTATACAGTGATTTCAACTTTGACCTACTTCACGTGTGTTTGATACAATAACATGTTATCGACTTTGACAGCACGGAGAGGTGGCCAGTCGTCAACGAAACGCTAGAATGGAATTTGTAAATGCTATTCCCCATACCCCTCGTGGCAGGTGTAGTTGATGACACTCTGGTAGACAATGTCCACAAACTCCATGTCTCCATGGCCCAGCGCTTCTGGGAGAGAGCAACTCTTTATACTTGAGCACGTGAGTCTAGACTTGGTCCAGCCTCCGCTAGCAGTGCAGCTGATTGTGCGAGAGCCTGAGGTGGGTGTGTACCCTCGTTTACACGACAGCGCCACCTCGTCTCCGGGGGAGTACACCCTCTGGAGCCCCTCCAGTTCCATACCGTCACCCAGGGGCGGGCGGCCACATTCTGAGGGGGCAGACAAGCAAAGGGACGggtcaataaacacacacacacacacacacaaaaaaacgtaTAGATTAACCAAAGAAGTGCCTGTGCAACTCCCCAGACATTCAGTTGACATTTTACGTAATGTCTAGTGATAGTTTGTTGAGCATAAGAAGGTAGGTGGACTATTCAAATAAAGTATATTTTTCCTTTCAGCTTACAGTAACTGAAAGTATTCGTCAACATGACACAAGCCCATTTGTCTCAACACACTCTGACAACATGCTCACTGAGAGTACGGAGGAATATTGAACAGCATACAGCGCAGAAACACAAAAGGCTTCTGAAATCAAGAGGTCAAAACACTGGAACACAAATGGAACAAAAAcacaaacgcaacatgtaaagtgttgcttCTATGTTTCATGAGTctttcatatgcacaaaaatcgTATTTCTCTGAAATGTATTGcactaatttgtttacatccctgttagtgagcatttgtcctttgccaagataatccatccacctgacaggtgtggcatatcaagaagctatcattacacaggtgcaccttatgctggggacaataaaaggccactctgaaatctgcagttttgtcacacaacataatgtcacagatgtctcaagttgagggagtgtgcaattgaatgttcatttctcttccATAAGCTGCTTCCAATGTcttttttagagaatttggcagtacatccaaccggcctcacaaccgcagaccacgtgtaaccatgccagcccaggaccgccACAACCAGCttattcacctgcgggatcgtctgagaccagccacccggacagctgattaaATTGTGGTTTTGCACAACCAAATCATTTCCGcacaaactgtctcagggaagctcatctgcatgctcgtcgtccttACCAGggccttgacctgactgcagttcggcatcgtaactgacttcagtgcgCAAaggctcaccttcgatggccactggcaagcTGGAGAAGTGTGCACTTCAAAAattaatcctggtttcaactgtaacgggcgtgtatggcgtcgtgcgGGCGAGCGGTTCGCTGATGTCAACGCTGTCAGAGTGGCccttggtggtggtggggttatggtatgggcaaccacaagctacggacaatgaacacaattgcattttatcgatgacaaTTTGAATACAAAGAGATAACGtggcgagatcctgaggcccattatcgtgccattcatctgccgtcatcacctcatgtttcagcatgatattgcacagccccatgttgcaaagATCTGTACAAAATACCTAGAAGCTAAAAATGCCCCAGTTCTttcatgacctgcatactcaccagacatgtcatccattgagcatgtttggaatgctctggatcgacatgtacgacaacatgttccagttcccgccagcaatatccagcaacttcacaaagCCATTGAAGAGGCATGGGACAACactccacaggccacaatcaacagcctgatcaaccctATTAGAAGGAAATGAcgctgccaatatccagcaacttcacaaagccattgaagaggcgtgggacaacattccacaatcaacagcctgagatggcgtcgcactgcatgaggcaaatggtggtcacacgcccatactattttttttaaaggtgttTGTGACCAGCACATCTGTGAAatgtcatgtgaaattcatagattaggacctaatgaatttatttcaattgactgatttccttacatgaactgtaactcagtttaaattgttgcatttatatttttgttcagtgtagagaCCGTAATAATAGATACTATACCTTTCTTGGTTGTCACTGGTGTATACAAGGCAAGCAGACAGATCAGCGGCAAAGACAGACTTGACAGTGCCATCGTCTGTGGTGTGGAGAGagcgtctctcctctctggtttcAAGGGTAAAAATCGGAATGTCGTTGGAGCTCCCAACTTTTTATGTTCGAGGTAATTGGAGAAGGGTCGATGACAACGCCGAATGAGGCAACCTCTGGCTCTTTTACTATTTACGTAATTTACCGTAAAGCACCAGACCTTTGTGAACCTTACTGTTGCCCCACCCCCATTCCTAGTACACATCACCAGTTTTCTGTAACTCTTCACCAAATCATGGTTGCCAGATCCATTTATGTGGTACAATAAAGTTGACTGAAGCTATTCTAGCAGTATAACATTGATGTGGCTAGATGACGCAGATCTACACACGCAGACCTACTAC

Function

symbol description
apoh Enables identical protein binding activity; lipoprotein lipase activator activity; and phospholipid binding activity. Involved in several processes, including blood coagulation, intrinsic pathway; negative regulation of apoptotic process; and regulation of blood coagulation. Located in cell surface and extracellular space. Part of chylomicron; high-density lipoprotein particle; and very-low-density lipoprotein particle. Colocalizes with collagen-containing extracellular matrix. Implicated in antiphospholipid syndrome; myocardial infarction; and peripheral vascular disease. Biomarker of arteriosclerosis; diabetes mellitus; diabetic retinopathy; macular retinal edema; and type 2 diabetes mellitus.

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317251 False 224 lncRNA 0.34 2 22984685 23065639
TU1317252 False 4580 lncRNA 0.42 4 22984685 23070622
TU1317250 True 4745 lncRNA 0.43 2 23065363 23070622

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 374314 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 388412 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 415877 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 442439 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 527681 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 10041 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 259612 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 296583 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 331774 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 441084 23511706 ~ 23591433 (+)
G1155018 NA non-coding upstream 1785 22982592 ~ 22982900 (+)
G1155017 NA non-coding upstream 2255 22982230 ~ 22982430 (+)
G1155012 NA non-coding upstream 18618 22965864 ~ 22966067 (+)
G1155010 NA non-coding upstream 20440 22964009 ~ 22964245 (+)
G1155008 NA non-coding upstream 22348 22962011 ~ 22962337 (+)
G1155020 NA non-coding downstream 287 23070909 ~ 23074684 (+)
G1155103 NA non-coding downstream 114985 23185607 ~ 23185933 (+)
G1155117 NA non-coding downstream 124134 23194756 ~ 23195438 (+)
G1155118 NA non-coding downstream 124484 23195106 ~ 23196092 (+)
G1155186 NA non-coding downstream 255798 23326420 ~ 23326628 (+)
G1155006 LOC100136012 other upstream 25334 22958932 ~ 22959351 (+)
G1154412 mcoln1 other upstream 472945 22511379 ~ 22511740 (+)
G1154335 NA other upstream 528336 22439636 ~ 22456349 (+)
G1154234 NA other upstream 825256 22158571 ~ 22159429 (+)
LOC110485992 LOC106585723 other downstream 525296 23595876 ~ 23608606 (+)
G1156089 NA other downstream 928024 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1256161 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1693480 24764102 ~ 24764346 (+)

Expression


Co-expression Network