G1155020


Basic Information

Item Value
gene id G1155020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23070909 ~ 23074684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317247
TTCAGGCTCATTCAAGTTATGGATATAATCAACAGGTTATTAGCAAAAGCAAGGCTGGATTATTTGGACACAAAGTCAAATAGACTGTTAAAACAGATATTTTTAAGTCATATTTATTTGTAATTTATTTGCCATATTTATCCTCTTTATATGGTGTTTATTTTGTTAGGTCAGCTTGACACATCGCAATCTCAGATGGAAGTGATTTGGGCTTGAGGGTGTACTCCATCTTGCCTGGTTCTAAGAGAAAGACAAGACACAAACACATTTGTCATTTTAGTTGTGAGAATATTAAGGGCTCAACTAAACAGCTTTGGGAAGCTTTGAAAATGTGATGGCAGCGACGACAACACGTtttactgggttgtgttcatttgtCATCAAACGGAATAAAATGGACTGAAACACGGAGAGACTACCGACACGTGTCCAGTAAGAAACACCCATTTTCGATTTACGtagtaaaatgttttaaaacttgCATGCCATAATGAACGTGACCATGTTATTTTGGTACGAAGGGCCTCACCTTTAAAGCATTCTGGGGTATTGAGTGTGCCGTCGATGCACTGACTTGCTACTGGAATGCCACACTTCAACTCCTTGTTCAGACAGTAGAACACAACAGGCTCACCGTGAAGGACTCTATTGGGTTTCAGATCCCCAATCCAGATCTTCTTGGCGTTGTAGAAGATGCGACCTCTGTTGATGTTAACTTTACAGGGGGCTGCGGTAAAGCGAGGACAAGCAAAGCAACATGACTCTCAGTTTAGCATTGAATATCATTAAATGTAATAGATCATGGACATATACAATAGGTTGGGAGAAACACATGGTCAGCCACACAGCAGCGACCCCGGATAAGGTTTGGGAATGCAGTGCTTTGCTCAAAAGGCTCTCATTACGCAATCATTGCAGTCACCAAATATGAAATAAATGGTTGCCGATACACATCGAATCCCATGCAAGTCAACAAGCTGGTTcgatatacagacacacacaagtgACATTCCCACAAGAGTAACAACAGTGCAACCTGGTCTATGACTCAATGGCTCAGATGTGAACTTTCCCCAATGCACAGCAGAGGAGGCTAGTGGGTGGAGCTATAGGAGGTCATGCTCATATTgcaatggctggaacggaatagaCAGAACctagtcaaacgtggtttccatatgtttgataccgttccatttaaaCCATTCCAGCCATGACAATGAgctcatcctcctatagctcctcccaccagcctctatGTACAGCTCTAGGGTCAGCTTCCCCTCCTACAATCATAATCTTAACCATTAGcgggggaaatgcaaaactgacagaAGATCAGCGTCtaagggcaacttcaccctacacggACTCACCTCTACAAACGGGCAAAGTGGACCAGTTGCCTGTATTCTGACACTGTATTTCCTCAGAACCGTCCAGAACGTAGTGTTCCTGGCACTGGTACTTGACCTTCTCCTTGTAGCCGGCCTCCCTCATCACAGCAAAGGTGATGATGCCATGGTCTATCGTTGGTGGGATGGAGCAACTCACCTCTGCAACAGGTCAGAAAGGTAATGGGCTAGTGAAAGTGTATTAGCAATGCAATATTGTCAGGATTAATCTAAATTACAGAAATAATTTTTAAGGCATAAACAGAGGAACATGGCGACAGGATTATGCAAATTGATCAATTATCCTCGCTTGGAGTGGATGAACAGTTAACAATAACCATTTTAACCAGAATCATCGTCAGGGCCGGTTCCAGGCATCAGCGGTTCCCATGCCGCTAGTGCCCCCtcccattttattttattagtatttattttttggaatctcaacttactgttgagagttaagATAATAGAATACACAAAGTGCAAgttcgaaatttggttgtgcatcactCAATTAACCATGTCAGCTAACaaagattggtaaattagtctagccagccaTCTGTCCGAATAACTACCAGGCAcgcagggcacgtgcccaggggccctgacctccaaaGGGCCcctattgattttgttagtcacgcTCACTCAGATATTATGAACATGGCATAAGTAATGGCAAAATGTGATCTCCACCCCATGGATAAATGGGAGAATTGCAGGGAATTAACCATAAAACATTTGGGAGGGGCAACCAAATCTCACATAGGGCTCCAAAAAGGCTAGACCCATGTAATAATGGGCCCCCATAAGATCAATTTATCAGTGGTTCCACCAGATGTCACTCAAAAACTTATCAACCAATGAGATTTGTTCATGATGGAACAGACAAACCATTTGGCATGTGCTGCCACTGTCTGCACCTACCCTTGCATACCGGTGGCTCAGTCACGTTTCCACTGGCCAAGCACGATCCTCTCTCGTTGCCAATGGGAGCTCTTGGCGGCAAACACTCATACGTCCAACTCTGTCCGTACTGGATTTCATTGCCAGTGAACTTCTTATTGTCATAGACAATTTTGCCATGCTTCGGTGCTTGAGGCAGAGCACAACTCACAGCTGCAGGGAAGAAATATTTTAAATAATCAAGACTATATTGACATATTTAGACAAACAGTGGAGAAAAGCAAGGTTACGTTCTGGAGGTATAGTATACCTTTACACATTGGTGGTGGTGCACTGAGGGTACCATCGTGTAAACACACGCTCTCATTGGCTCCTATCATGACGTACCTGAAGAACACACATTCTTATTGGTCTGAGATGCAGCGAGTCAGCAAAATGTAGTCAGAACTAAACCGCACTGTATTTCCCCTCACCCGTCATCACATGTGTAGTTGAGTACACTCTTGAATGGCACGTCAATCATCCCTGGCTTTTGCATAGGCTTGGGGAGAGGGCACATCTTTGCTGTGTCAAAAATTGATTAGCTTCATGTGGATATAATTTATGCATTTCatgttgtacatttttttttgggggggggggggggggggggggggtcctataTCCCTAGCCCCTTGCTAAAGTATGGACTGTCCAGGTGACTTTAGGGTTCCAAAATTCTCAGAAAcattcccaaaattcccaggttttccagttGGAAGATTCCTTGAATCAGCGACTTAATAAGCAAGAAAtctggaatcctccaaccaggatttgtGGAAAACCCAGCAATCTACCTGAATTTTTGTGAACATAGGTGGACTTATGCTTTACATTGTGTAATGGATGTTTTGCGAACGGGGTGGAGCTTACGAGAACACACAAGGTCCAGTTTGGTCCACTCTCCCGAGGCAGAGCAGGTGATCCTGGCAGTCTTGCCGGTCCCAGGTGTGTATCCACGCTCGCACGCCAGGGTCACCTCTTCTCCAATCTCATACACGCGCTTTAGACCCAATGCATCTATACCGTCGGTCACAGGCGGACGGCCACACACTTCTTGGATGTCACGGACGTATGCAAGGCAAGCTGACAGAGCAGCAGCAAAGCCAAGGTTGGGTTCATCTTCCGGGGGAGGGTTGAGAGAGACTGTGTCCGTTCTTTCGGGCAGTGGACGGTGAAAAATGTAGATGGTCCATTCAAAAGCCCAGAAAGTCTGAGCCAATGAGATGGCCGGAATTAGGCTTCCAAATCGATTGAACCCAAAGTTCAAAGCACATG
>TU1317248
ATTTTTAAGTCATATTTATTTGTAATTTATTTGCCATATTTATCCTCTTTATATGGTGTTTATTTTGTTAGGTCAGCTTGACACATCGCAATCTCAGATGGAAGTGATTTGGGCTTGAGGGTGTACTCCATCTTGCCTGGTTCTTTAAAGCATTCTGGGGTATTGAGTGTGCCGTCGATGCACTGACTTGCTACTGGAATGCCACACTTCAACTCCTTGTTCAGACAGTAGAACACAACAGGCTCACCGTGAAGGACTCTATTGGGTTTCAGATCCCCAATCCAGATCTTCTTGGCGTTGTAGAAGATGCGACCTCTGTTGATGTTAACTTTACAGGGGGCTCTACAAACGGGCAAAGTGGACCAGTTGCCTGTATTCTGACACTGTATTTCCTCAGAACCGTCCAGAACGTAGTGTTCCTGGCACTGGTACTTGACCTTCTCCTTGTAGCCGGCCTCCCTCATCACAGCAAAGGTGATGATGCCATGGTCTATCGTTGGTGGGATGGAGCAACTCACCTCCTTGCATACCGGTGGCTCAGTCACGTTTCCACTGGCCAAGCACGATCCTCTCTCGTTGCCAATGGGAGCTCTTGGCGGCAAACACTCATACGTCCAACTCTGTCCGTACTGGATTTCATTGCCAGTGAACTTCTTATTGTCATAGACAATTTTGCCATGCTTCGGTGCTTGAGGCAGAGCACAACTCACAGCTTTACACATTGGTGGTGGTGCACTGAGGGTACCATCGTGTAAACACACGCTCTCATTGGCTCCTATCATGACGTACCCGTCATCACATGTGTAGTTGAGTACACTCTTGAATGGCACGTCAATCATCCCTGGCTTTTGCATAGGCTTGGGGAGAGGGCACATCTTTGGAGAACACACAAGGTCCAGTTTGGTCCACTCTCCCGAGGCAGAGCAGGTGATCCTGGCAGTCTTGCCGGTCCCAGGTGTGTATCCACGCTCGCACGCCAGGGTCACCTCTTCTCCAATCTCATACACGCGCTTTAGACCCAATGCATCTATACCGTCGGTCACAGGCGGACGGCCACACACTTCTTGGATGTCACGGACGTATGCAAGGCAAGCTGACAGAGCAGCAGCAAAGCCAAGGTTGGGTTCATCTTCCGGGGGAGGGTTGAGAGAGACTGTGTCCGTTCTTTCGGGCAGTGGACGGTGAAAAATGTAGATGGTCCATTCAAAAGCCCAGAAAGTCTGAGCCAATGAGATGGCCGGAATTAGGCTTCCAAATCGATTGAACCCAAAGTTCAAAGCACATG

Function

NR:

description
beta-2-glycoprotein 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317247 False 3626 lncRNA 0.45 2 23070909 23074684
TU1317248 True 1285 lncRNA 0.49 8 23071007 23074684

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 460538 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 474636 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 502101 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 528663 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 613905 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 5979 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 255550 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 292521 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 327712 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 437022 23511706 ~ 23591433 (+)
G1155021 apoh non-coding upstream 287 22984685 ~ 23070622 (+)
G1155018 NA non-coding upstream 88009 22982592 ~ 22982900 (+)
G1155017 NA non-coding upstream 88479 22982230 ~ 22982430 (+)
G1155012 NA non-coding upstream 104842 22965864 ~ 22966067 (+)
G1155010 NA non-coding upstream 106664 22964009 ~ 22964245 (+)
G1155103 NA non-coding downstream 110923 23185607 ~ 23185933 (+)
G1155117 NA non-coding downstream 120072 23194756 ~ 23195438 (+)
G1155118 NA non-coding downstream 120422 23195106 ~ 23196092 (+)
G1155186 NA non-coding downstream 251736 23326420 ~ 23326628 (+)
G1155022 NA non-coding downstream 279645 23354329 ~ 23356866 (+)
G1155006 LOC100136012 other upstream 111558 22958932 ~ 22959351 (+)
G1154412 mcoln1 other upstream 559169 22511379 ~ 22511740 (+)
G1154335 NA other upstream 614560 22439636 ~ 22456349 (+)
G1154234 NA other upstream 911480 22158571 ~ 22159429 (+)
LOC110485992 LOC106585723 other downstream 521234 23595876 ~ 23608606 (+)
G1156089 NA other downstream 923962 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1252099 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1689418 24764102 ~ 24764346 (+)

Expression


Co-expression Network