G1156079


Basic Information

Item Value
gene id G1156079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23977034 ~ 23979017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1318384
TCAAGACAGTAACACAGTTGCTATGACAGCGTGTCTTCATCAAGTAACGTTAGCCTATCAAGAATTTACGACGAGCCCTCTCATTCAAATGTAAAAGGACAGTAGGCCTACCGTACAGCATCACAACAGACCAGGCTTCATTTTTATCAAGACGATGCAAATCGTTACATGTGGTACAAGCAAATTGCGACTGAAAACTTGGTTTTATGTGAATTCACCCCAACAAGCTGTTTTATATGGAAGCCCGAAACCGCCACCCCAGAAATGTAATACGATTTCCCTTGTGATTTGTCAACGTGCACAATTAGTCTGTgcttcagtctgatcaactgtagcctactgataacaaccacagctgcaggtAGCTAAGAGAAGCCTGTGCGCTCTGATCCCATCTGGGCCAGGGGAAACATAGCGTCATGTTTTTAATAGCTCAAGCTATTTACTTAGAGGCTATTTATTTGTGTTCTGAGAAAATGTGATCAAATGTGATCAAATGTGATCAAATGTAGTTTTTGTATTCACACTTCAGGGGGCTTGGCTGCCTTGGCCTTTTTAATCCAAAATGATTGACTGGAATGAATCAATCAACCCAATGGTGATGTCATAATGTATGAGTATCTTTTCAATTACAGACGCAAAGGTCTATACCCTGCAACCCTGCATACAGCGAACTCAGCCCTGTTTGTTTTCATGTTCGTTTTGGGCCAATTGTTGTTCTCTTTGTCTGTGTGAAGGGTTTTAATGTTTTCATCCTCCCTAGGGGCAGGAGTTTTCCcagggattattattatttatttttttaaaccgtATGTTTAGAAAAGCTATGTGGTCCCATCATAGCCCGTATGAaacccattaaaaaaaaaaaagttttttttttactgctgatTTATAACAACGTCATATGCAACAACTAGGGTCCGGATGTTGGTTAGGTTAGCCTACTACCAGATTAGGAAAAACTCTAAGCCCCAGGaaaacaatcccccccccccctaaccactCTGGGACCAGTGGTGCCACCTCTGAAATCATCACACAATGTTACAAAGGAAGAAGACAAAACATACTTGTATGATCTGCATTTGACATGTTTTTTGGTGGTAGGGATGGGCTTCCATAGTTTTACGTGGCTCAGTGCAGCCAGCAGCTACTGCAACAATTCCAGAACGTAACAGGCTATCGCTGCGATTTCAGGTAAAAACTCAATTAAAACAAGTCTAAAATATTATGAAAATGTCTATACATTTCAGCCGTTTCAAAAAACATTGCACCGCTAGTACCATTCATACTGTGGGCTCAACAAGACAATAGTGTTTACacagggggggggagggggggcatcTGTCTGTCGAGATGCCCCCCCGGATGTAGCGGCTGAGACGTAGCAAGTATGCACGTTTTCATTTGAGTAATATGTGTAGCCGCCATATTGACCCTTCGCCTCAAAAAGGCGAAGTGGAGCTGTAGTGACTCCCTGCAACAAATGCACTGCTACCACACCTCACCCCCCTGGCTTTTGATTTCTCTAGCCATTTTTTCGAGGTTTTGGTTCACGCTCGGGGTCTCCGTATTTGAAAGTTGAAGCTCCTGCTCTTAAAGGGGAGATTCATGCACAGACTACTGCCTACTTTTGTAGTCCGTCTCGGGTTTTGTATGATACGTTtttattacatatatatatatatttatttttatacattcaAAATCAATATGTAATCCTGTGCAGGGGCTTATCCCCTGCACTAGGCCATTTGTGAGGCTCTTTGAGCTTTGTTACAGGTCTTCTGGCGGCTCTATGCCACAGATTGATTAGGTGCAGTGCCAGAATCCTATCAAATGGCCAGCTCTGATGATGGTGCACACTCTTTCAGGGCCTCTAGTTGACTGGAACTGGAGATAAGGCTGGATGGCAATTCCCTTCCCTCCTGCTGCACTCTGGGtagagaaaaaaagaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1318384 True 1964 lncRNA 0.43 2 23977034 23979017

Neighbor

gene id symbol gene type direction distance location
LOC110485113 NA coding upstream 55376 23914319 ~ 23921658 (+)
LOC110486007 LOC106585823 coding upstream 64831 23894045 ~ 23912203 (+)
LOC110486005 comd1 coding upstream 86507 23878481 ~ 23890527 (+)
LOC118938611 NA coding upstream 115446 23861456 ~ 23861588 (+)
LOC118938574 NA coding upstream 145517 23831384 ~ 23831517 (+)
LOC110486008 LOC106564858 coding downstream 5742 23984759 ~ 23990432 (+)
LOC110486012 LOC106585868 coding downstream 56195 24035212 ~ 24046678 (+)
LOC110486011 LOC106585850 coding downstream 70612 24049629 ~ 24066383 (+)
LOC110486014 LOC106585894 coding downstream 166195 24145212 ~ 24158953 (+)
actr2a LOC106585927 coding downstream 211036 24190053 ~ 24210340 (+)
G1156065 NA non-coding upstream 20495 23956250 ~ 23956539 (+)
G1156046 NA non-coding upstream 57360 23919471 ~ 23919674 (+)
G1156025 NA non-coding upstream 108749 23868070 ~ 23868285 (+)
G1156000 NA non-coding upstream 202016 23774613 ~ 23775018 (+)
G1156004 NA non-coding upstream 202543 23774209 ~ 23774491 (+)
G1156096 NA non-coding downstream 37608 24016625 ~ 24017093 (+)
G1156104 NA non-coding downstream 47658 24026675 ~ 24026898 (+)
G1156107 NA non-coding downstream 51896 24030913 ~ 24031133 (+)
G1156109 NA non-coding downstream 54369 24033386 ~ 24033591 (+)
G1156126 NA non-coding downstream 103671 24082688 ~ 24084733 (+)
LOC110485992 LOC106585723 other upstream 378031 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 405254 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1017683 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1366755 22606256 ~ 22610371 (+)
G1154412 mcoln1 other upstream 1465294 22511379 ~ 22511740 (+)
G1156089 NA other downstream 19629 23998646 ~ 24003968 (+)
G1156247 NA other downstream 347766 24326783 ~ 24328963 (+)
G1157117 NA other downstream 785085 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1122523 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1434092 25410869 ~ 25419361 (+)

Expression


Co-expression Network