Gene
RNA
| Item | Value |
|---|---|
| gene id | G1156126 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 24082688 ~ 24084733 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: vacuolar protein sorting-associated protein 54-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1318438 | True | 439 | lncRNA | 0.58 | 2 | 24082688 | 24084733 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486011 | LOC106585850 | coding | upstream | 16305 | 24049629 ~ 24066383 (+) |
| LOC110486012 | LOC106585868 | coding | upstream | 36010 | 24035212 ~ 24046678 (+) |
| LOC110486008 | LOC106564858 | coding | upstream | 92256 | 23984759 ~ 23990432 (+) |
| LOC110485113 | NA | coding | upstream | 161030 | 23914319 ~ 23921658 (+) |
| LOC110486007 | LOC106585823 | coding | upstream | 170485 | 23894045 ~ 23912203 (+) |
| LOC110486014 | LOC106585894 | coding | downstream | 60479 | 24145212 ~ 24158953 (+) |
| actr2a | LOC106585927 | coding | downstream | 105320 | 24190053 ~ 24210340 (+) |
| LOC110486019 | LOC106585964 | coding | downstream | 177214 | 24261947 ~ 24300246 (+) |
| LOC110486021 | LOC106585998 | coding | downstream | 232315 | 24317048 ~ 24321237 (+) |
| LOC118938548 | NA | coding | downstream | 286891 | 24371624 ~ 24373364 (+) |
| G1156109 | NA | non-coding | upstream | 49097 | 24033386 ~ 24033591 (+) |
| G1156107 | NA | non-coding | upstream | 51555 | 24030913 ~ 24031133 (+) |
| G1156104 | NA | non-coding | upstream | 55790 | 24026675 ~ 24026898 (+) |
| G1156096 | NA | non-coding | upstream | 65595 | 24016625 ~ 24017093 (+) |
| G1156079 | NA | non-coding | upstream | 103671 | 23977034 ~ 23979017 (+) |
| G1156139 | NA | non-coding | downstream | 11359 | 24096092 ~ 24097844 (+) |
| G1156214 | NA | non-coding | downstream | 126377 | 24211110 ~ 24211418 (+) |
| G1156216 | NA | non-coding | downstream | 128766 | 24213499 ~ 24213708 (+) |
| G1156219 | NA | non-coding | downstream | 133330 | 24218063 ~ 24218297 (+) |
| G1156220 | NA | non-coding | downstream | 135889 | 24220622 ~ 24220931 (+) |
| G1156089 | NA | other | upstream | 78720 | 23998646 ~ 24003968 (+) |
| LOC110485992 | LOC106585723 | other | upstream | 483685 | 23595876 ~ 23608606 (+) |
| pitpnc1a | LOC106585713 | other | upstream | 510908 | 23511706 ~ 23591433 (+) |
| G1155006 | LOC100136012 | other | upstream | 1123337 | 22958932 ~ 22959351 (+) |
| c13h17orf67 | LOC106564992 | other | upstream | 1472409 | 22606256 ~ 22610371 (+) |
| G1156247 | NA | other | downstream | 242050 | 24326783 ~ 24328963 (+) |
| G1157117 | NA | other | downstream | 679369 | 24764102 ~ 24764346 (+) |
| G1157292 | NA | other | downstream | 1016807 | 25082584 ~ 25105138 (+) |
| LOC110486053 | polr3f | other | downstream | 1328376 | 25410869 ~ 25419361 (+) |
| G1157952 | LOC106584892 | other | downstream | 1378194 | 25462927 ~ 25463458 (+) |
