G1156377


Basic Information

Item Value
gene id G1156377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24543595 ~ 24544417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1318711
TCAGAGGTTCACATTTTTAATCCAAATCACATGGTTTTAGTCATTATTATTTTACTTAAGAAAACTTGATAAGAAAATACAATTCGTTGTAATTAACAAACACAAAACCAATAGTTTTAACAATGGTATGGATTACAAAATACATGCAAGCATGCTGAAATGAATGATCATTCCAATATCTGATCCTTACAGAAACTGACACAGATTATAAGGCATTAAATGGTGGGTTACACATTGTTGAAAAACTACTCATCGGATGAATTACTGAAATGAAGTTTACTTATTACAGAATAAGATCTATTGCTGTCTGACATAACTAGATCTCTCTTGTGGAGACTGTGGGTAGCTCCTTGCTGCTCCTCAGGCGCACTCCAAGGCGGTAGGGCTTTGGAGACTGTGTCCCACCAAAGATGAGGCTGAAATCTGGGACACCTCCATCCTCAGGCCAGACGAATCGGTAACGCCGAAGCAATGTCACTAGAACCAGGAAGAGCTCCATACGTGCTAACCCCTCCCCCAGACACACACGAGATcctAGAGAATGGCAGAAAGGCTTCTGGTTTCACAAACTCTCCGACCTCGTTGAGGAAGTTCTCAGGGTTGAACTCGTGAGGGAATTTCCACTGGCCCTCTTCATGCAGCACTGAAGACAGGTTAGGAATCACCACCGTGCC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108268537

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1318711 True 674 lncRNA 0.43 2 24543595 24544417

Neighbor

gene id symbol gene type direction distance location
LOC110486030 LOC106586106 coding upstream 21092 24484604 ~ 24522503 (+)
esf1 LOC106564836 coding upstream 67508 24464332 ~ 24476087 (+)
LOC110486025 LOC106586048 coding upstream 102311 24413520 ~ 24441284 (+)
LOC118938548 NA coding upstream 170231 24371624 ~ 24373364 (+)
LOC110486021 LOC106585998 coding upstream 222358 24317048 ~ 24321237 (+)
LOC110486033 LOC106564832 coding downstream 10528 24554945 ~ 24624188 (+)
LOC110486034 LOC106586144 coding downstream 162730 24707147 ~ 24719985 (+)
LOC110486038 LOC106586164 coding downstream 359634 24904051 ~ 24996436 (+)
LOC110486039 LOC106586175 coding downstream 503424 25047841 ~ 25065592 (+)
iip iip coding downstream 527135 25071552 ~ 25072676 (+)
G1156339 NA non-coding upstream 51555 24419718 ~ 24492040 (+)
G1156334 NA non-coding upstream 141233 24401574 ~ 24402362 (+)
G1156314 NA non-coding upstream 142814 24400482 ~ 24400781 (+)
G1156301 NA non-coding upstream 163313 24380073 ~ 24380282 (+)
G1156299 NA non-coding upstream 164882 24378484 ~ 24378713 (+)
G1156385 LOC100135918 non-coding downstream 81689 24626106 ~ 24655031 (+)
G1156386 LOC100135918 non-coding downstream 110658 24655075 ~ 24658914 (+)
G1156384 NA non-coding downstream 118710 24663127 ~ 24669484 (+)
G1156424 NA non-coding downstream 136162 24680579 ~ 24680927 (+)
G1156426 NA non-coding downstream 138438 24682855 ~ 24683067 (+)
G1156247 NA other upstream 214632 24326783 ~ 24328963 (+)
G1156089 NA other upstream 539627 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 944592 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 971815 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1584244 22958932 ~ 22959351 (+)
G1157117 NA other downstream 219685 24764102 ~ 24764346 (+)
G1157292 NA other downstream 557123 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 868692 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 918510 25462927 ~ 25463458 (+)
G1157972 NA other downstream 928705 25473122 ~ 25473978 (+)

Expression


Co-expression Network