G1156448


Basic Information

Item Value
gene id G1156448
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24730563 ~ 24730780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1318795
CAATTGGCCTCGGAGATCCCACTCGTCTTTGAAGTATAGCTATCGTGTTGTCGCTATATAATGTAGCGAGAGTGTTATTTTTGTCTTAGTGGTTGAacatattatttttgttgttgtttggtcATCCTCCAGATCTGCTTTGCTTTGTGGTGAGAATACTGAGTATAGGTCAACATCCACAAATGTTttgtccacaaatgttctactTCTCTATGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1318795 True 218 lncRNA 0.39 1 24730563 24730780

Neighbor

gene id symbol gene type direction distance location
LOC110486034 LOC106586144 coding upstream 12026 24707147 ~ 24719985 (+)
LOC110486033 LOC106564832 coding upstream 106375 24554945 ~ 24624188 (+)
LOC110486030 LOC106586106 coding upstream 208060 24484604 ~ 24522503 (+)
esf1 LOC106564836 coding upstream 254476 24464332 ~ 24476087 (+)
LOC110486025 LOC106586048 coding upstream 289279 24413520 ~ 24441284 (+)
LOC110486038 LOC106586164 coding downstream 173271 24904051 ~ 24996436 (+)
LOC110486039 LOC106586175 coding downstream 317061 25047841 ~ 25065592 (+)
iip iip coding downstream 340772 25071552 ~ 25072676 (+)
LOC110486040 ifm3 coding downstream 359785 25090565 ~ 25091740 (+)
LOC118938245 NA coding downstream 362765 25093545 ~ 25104730 (+)
G1156446 NA non-coding upstream 2498 24727863 ~ 24728065 (+)
G1156443 NA non-coding upstream 16882 24713364 ~ 24713681 (+)
G1156442 NA non-coding upstream 17281 24713032 ~ 24713282 (+)
G1156439 NA non-coding upstream 26454 24703591 ~ 24704109 (+)
G1156453 NA non-coding downstream 3141 24733921 ~ 24734132 (+)
G1157104 NA non-coding downstream 16764 24747544 ~ 24747781 (+)
G1157121 NA non-coding downstream 36792 24767572 ~ 24767798 (+)
G1157124 NA non-coding downstream 40916 24771696 ~ 24771900 (+)
G1157126 NA non-coding downstream 46332 24777112 ~ 24777348 (+)
G1156247 NA other upstream 401600 24326783 ~ 24328963 (+)
G1156089 NA other upstream 726595 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1131560 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1158783 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1771212 22958932 ~ 22959351 (+)
G1157117 NA other downstream 33322 24764102 ~ 24764346 (+)
G1157292 NA other downstream 370760 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 682329 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 732147 25462927 ~ 25463458 (+)
G1157972 NA other downstream 742342 25473122 ~ 25473978 (+)

Expression


Co-expression Network