G1157309


Basic Information

Item Value
gene id G1157309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25070642 ~ 25071023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1319822
ggatgaccacatcagtgactcaacccactcaggtgacgcacctcctccagggacggcatgagagagccccagtaaagccagtgactcagcccctgtaatagggttagaggcagagaatcccagtggaaagaggggaaccggccaggcagagacagcaagggtggttcgttgctccagagcctttccgttcacactcccactcctgggccagactacactcaatcatatgacccactgaagagatgagtcttcagtagagacttaaaggttgagaccgagtttgcgtctctgacatgggtaggcagaccgttccataaaaatggagctctataggagaaagccctgcctccagctgtttgcttaaaaattctagggacaatta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1319822 True 382 lncRNA 0.52 1 25070642 25071023

Neighbor

gene id symbol gene type direction distance location
LOC110486039 LOC106586175 coding upstream 5050 25047841 ~ 25065592 (+)
LOC110486038 LOC106586164 coding upstream 74206 24904051 ~ 24996436 (+)
LOC110486034 LOC106586144 coding upstream 352105 24707147 ~ 24719985 (+)
LOC110486033 LOC106564832 coding upstream 446454 24554945 ~ 24624188 (+)
LOC110486030 LOC106586106 coding upstream 548139 24484604 ~ 24522503 (+)
iip iip coding downstream 529 25071552 ~ 25072676 (+)
LOC110486040 ifm3 coding downstream 19542 25090565 ~ 25091740 (+)
LOC118938245 NA coding downstream 22522 25093545 ~ 25104730 (+)
ifm3 ifm3 coding downstream 30501 25101524 ~ 25102652 (+)
LOC110486044 LOC106586224 coding downstream 70176 25141199 ~ 25143963 (+)
G1157286 NA non-coding upstream 44177 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 46808 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 48980 25021366 ~ 25021662 (+)
G1157266 NA non-coding upstream 73171 24997259 ~ 24997471 (+)
G1157172 NA non-coding upstream 236314 24833957 ~ 24834328 (+)
G1157292 NA non-coding downstream 11561 25082584 ~ 25105138 (+)
G1157617 NA non-coding downstream 121335 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 125322 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 135440 25206463 ~ 25206703 (+)
LOC110486047 tmem63b non-coding downstream 149793 25220536 ~ 25319211 (+)
G1157117 NA other upstream 306296 24764102 ~ 24764346 (+)
G1156247 NA other upstream 741679 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1066674 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1471639 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1498862 23511706 ~ 23591433 (+)
LOC110486053 polr3f other downstream 342086 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 391904 25462927 ~ 25463458 (+)
G1157972 NA other downstream 402099 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 785609 25813029 ~ 25872772 (+)

Expression


Co-expression Network