G1157643


Basic Information

Item Value
gene id G1157643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25196345 ~ 25196646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1320195
GTAttaaccagtggaggctgctgaggggaggacggctcataataatgactggaacggagcaaatggaatggcatcaaacatattgaaaccatgtgtttgatgtacttgataccattccacaaattccactccagccattaccacaagcccgtcctccccagttaaggtgccaccaaactCATGTGGTTTTAACTGTGCCTTTTAGCCTGGTAAAAGTGTCTTGACAAGTTTCTTGTGGAAATCTGCCTACTCTCACATTTGTTCCCACGGTGGATTCCAGTCTAAAATACAGTCATCATTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1320195 True 302 lncRNA 0.44 1 25196345 25196646

Neighbor

gene id symbol gene type direction distance location
LOC110486045 s5a2 coding upstream 7961 25168165 ~ 25188384 (+)
LOC110486044 LOC106586224 coding upstream 52382 25141199 ~ 25143963 (+)
LOC118938245 NA coding upstream 91615 25093545 ~ 25104730 (+)
ifm3 ifm3 coding upstream 93693 25101524 ~ 25102652 (+)
LOC110486040 ifm3 coding upstream 104605 25090565 ~ 25091740 (+)
LOC110486047 tmem63b coding downstream 23890 25220536 ~ 25319211 (+)
LOC110486051 LOC106584925 coding downstream 166183 25362829 ~ 25376936 (+)
LOC118938060 NA coding downstream 193850 25390496 ~ 25392938 (+)
LOC110486052 LOC106584902 coding downstream 199485 25396131 ~ 25404252 (+)
LOC110486053 polr3f coding downstream 214223 25410869 ~ 25419361 (+)
G1157617 NA non-coding upstream 3761 25192358 ~ 25192584 (+)
G1157292 NA non-coding upstream 109935 25082584 ~ 25105138 (+)
G1157309 NA non-coding upstream 125322 25070642 ~ 25071023 (+)
G1157286 NA non-coding upstream 169880 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 172511 25023473 ~ 25023834 (+)
G1157653 NA non-coding downstream 9817 25206463 ~ 25206703 (+)
G1157667 NA non-coding downstream 125581 25322227 ~ 25322831 (+)
G1157746 NA non-coding downstream 158661 25355307 ~ 25355533 (+)
G1157117 NA other upstream 431999 24764102 ~ 24764346 (+)
G1156247 NA other upstream 867382 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1192377 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1597342 23595876 ~ 23608606 (+)
G1157952 LOC106584892 other downstream 266281 25462927 ~ 25463458 (+)
G1157972 NA other downstream 276476 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 659986 25813029 ~ 25872772 (+)
G1158563 NA other downstream 913850 26110496 ~ 26115864 (+)

Expression


Co-expression Network