G1157788


Basic Information

Item Value
gene id G1157788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25429531 ~ 25429979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1320360
aaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaaccctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactatgga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1320360 True 449 lncRNA 0.43 1 25429531 25429979

Neighbor

gene id symbol gene type direction distance location
LOC110486053 polr3f coding upstream 10170 25410869 ~ 25419361 (+)
LOC110486052 LOC106584902 coding upstream 25279 25396131 ~ 25404252 (+)
LOC118938060 NA coding upstream 36593 25390496 ~ 25392938 (+)
LOC110486051 LOC106584925 coding upstream 53430 25362829 ~ 25376936 (+)
LOC110486047 tmem63b coding upstream 110320 25220536 ~ 25319211 (+)
LOC110486054 LOC106564778 coding downstream 11136 25441115 ~ 25455367 (+)
LOC110486056 LOC106584953 coding downstream 69821 25499800 ~ 25607402 (+)
LOC118938061 NA coding downstream 381899 25784839 ~ 25866420 (+)
LOC110516919 NA coding downstream 415304 25845283 ~ 25849666 (+)
LOC110516920 LOC106578598 coding downstream 426357 25813029 ~ 25872772 (+)
G1157785 NA non-coding upstream 4208 25424989 ~ 25425323 (+)
G1157784 NA non-coding upstream 5848 25423198 ~ 25423683 (+)
G1157779 NA non-coding upstream 12321 25416485 ~ 25417210 (+)
G1157772 NA non-coding upstream 23334 25405994 ~ 25406197 (+)
G1157783 NA non-coding downstream 1836 25431815 ~ 25432257 (+)
G1157940 NA non-coding downstream 8073 25438052 ~ 25438296 (+)
G1157941 NA non-coding downstream 8376 25438355 ~ 25438558 (+)
G1157951 LOC106584892 non-coding downstream 32190 25462169 ~ 25462676 (+)
G1157953 NA non-coding downstream 33482 25463461 ~ 25463682 (+)
G1157292 NA other upstream 324393 25082584 ~ 25105138 (+)
G1157117 NA other upstream 665185 24764102 ~ 24764346 (+)
G1156247 NA other upstream 1100568 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1425563 23998646 ~ 24003968 (+)
G1157952 LOC106584892 other downstream 32948 25462927 ~ 25463458 (+)
G1157972 NA other downstream 43143 25473122 ~ 25473978 (+)
G1158563 NA other downstream 680517 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 733820 26163799 ~ 26217394 (+)

Expression


Co-expression Network