G1158422


Basic Information

Item Value
gene id G1158422
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25848644 ~ 25970954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1321127
cagcagacacacacatgaGAGAAACCTTATGGCTATGATCAATGTgacaagagatactctgataaaatatatctaatcaaacatcagaaaatacatggagttgtttcatgatatcaattaAATattgtcacaatgtagaatgttgtaacattgtagaaggagtattTGAATGAATTTCACAATGTAGCACCCTAAACGTTTGCCCCCTGTTCAATTTGATAAATTGATATTAGCCTCTGGGGAAGaatccaggctctgaattgaaTTAGTTCTATTTATGTGATTTAACAAAAAGATCAGGTGTGATGTTAATgtttatgttttgtattgtttataaaatatatattttcaggtCTTTTTTCGTAACTTAATTTCAACGTACTTGCAGCTTATACACCTATAATCAATATTATTAACAATCCtacatcactccagtatttatTGACAACATTCAAGCGCTGATTGTCtttattccactactgaagaagcatgactcaaatcacctcatatttcaaacaTTCAGCCTGACAAAGATATGTTTTATTTTTCCATGCCTCACCAA
>TU1321128
TCCCGAACATGagttcactaagctactctcctcctgTTTAAGAAGAgggggtctgctggacggagaaagaagctcaCGTGAAAGAGGAGGCttttacaatacaaaaacaagtagagggtgaggcagttaccgtgaaagaagaagagaaagacgccTTCAGAGTGGAGGATGAAGACGTTTTTGGAATgaagaatgaagaaggggagattactgtcacattaGAGTAGGACGAAGAAGAGAAGACtggagatctgattaacaccagtaaatacagagagagacgggtctatcgtggatcctctggtgatcctcaacaacatcatgatgctgacaaggcagagaagagtctctccagatcagaacacctcaagaaacacctaccgagacccacagggaagaaatctcaccactgctctgactgtgggaagagttactCAAGATCAGATTCACTTAAACTACATAAGAGAATACACCAGcgagtacacacaggagagaaacctcacCACTGTtttgactgtgggaagagttactTAAAATCAAATTCACTTAAACTACACCtgagaatacacactggagagaatcttcacttctgctctgactgtgggaagagattcacctcTTCAGTAGACCTTAAAATACATCAGAGAATTCACACTGTAGAGAAACcttatggctgtgatcaatgtgggaagagttttactcagtcaagcggcctgatatcacaccagataACACACACATGAGAGAAACCTTATGGCTATGATCAATGTGACGAGATACTCTGATAAAATATATCTAaccaaacatcagaaaatacatggagttgtttcatgatatcaattaAATattgtcacaatgtagaatgttgtaacattgtagaaggagtattTGAATGAATTTCACAATGTAGCACCCTAAACGTTTGCCCCCTGTTCAATTTGATAAATTGATATTAGCCTCTGGGGAAGaatccaggctctgaattgaaTTAGTTCTATTTATGTGATTTAACAAAAAGATCAGGTGTGATGTTAATgtttatgttttgtattgtttataaaatatatattttcaggtCTTTTTTCGTAACTTAATTTCAACGTACTTGCAGCTTATACACCTATAATCAATATTATTAACAATCCtacatcactccagtatttatTGACAACATTCAAGCGCTGATTGTCtttattccactactgaagaagcatgactcaaatcacctcatatttcaaacaTTCAGCCTGACAAAGATATGTTTTATTTTTCCATGCCTCACCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1321127 False 562 lncRNA 0.32 2 25848644 25970954
TU1321128 True 1285 lncRNA 0.39 4 25966864 25970954

Neighbor

gene id symbol gene type direction distance location
LOC118938061 NA coding upstream 35724 25784839 ~ 25866420 (+)
LOC110486056 LOC106584953 coding upstream 241242 25499800 ~ 25607402 (+)
LOC110486054 LOC106564778 coding upstream 393277 25441115 ~ 25455367 (+)
LOC110486053 polr3f coding upstream 429283 25410869 ~ 25419361 (+)
LOC110486052 LOC106584902 coding upstream 444392 25396131 ~ 25404252 (+)
LOC118938446 LOC106595012 coding downstream 74028 26044982 ~ 26048058 (+)
LOC110487373 LOC106608452 coding downstream 87210 26058164 ~ 26080918 (+)
LOC110487393 NA coding downstream 87752 26058706 ~ 26066334 (+)
LOC110487386 LOC106595012 coding downstream 116977 26087931 ~ 26095676 (+)
LOC110487402 NA coding downstream 170587 26141541 ~ 26155230 (+)
LOC110516919 NA non-coding upstream 486 25845283 ~ 25849666 (+)
G1158424 NA non-coding upstream 973 25846832 ~ 25847671 (+)
G1158310 NA non-coding upstream 114341 25734037 ~ 25734303 (+)
G1158304 NA non-coding upstream 117854 25730495 ~ 25730790 (+)
G1158302 NA non-coding upstream 118458 25729936 ~ 25730186 (+)
G1158542 NA non-coding downstream 78844 26049798 ~ 26064387 (+)
G1158539 NA non-coding downstream 101307 26072261 ~ 26085129 (+)
G1158562 NA non-coding downstream 157829 26128783 ~ 26139138 (+)
G1157972 NA other upstream 374666 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 385186 25462927 ~ 25463458 (+)
G1157292 NA other upstream 743506 25082584 ~ 25105138 (+)
G1157117 NA other upstream 1084298 24764102 ~ 24764346 (+)
G1158563 NA other downstream 139542 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 192845 26163799 ~ 26217394 (+)
LOC110487383 LOC106564416 other downstream 1138171 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 1319283 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1522200 27493154 ~ 27768641 (+)

Expression


Co-expression Network