G1158542


Basic Information

Item Value
gene id G1158542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26049798 ~ 26064387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1321259
atagccctattgggttaaagacgaagtccatattatgtcaagaacagctcaaataagcaaagagaagcaactgtccatcattactttaaggaccaccacaataatggaagacccagagttacttctgatgcataagttcattagagttaccagccttagaaattgcagcccaaataaatgctttagaagttcaagcaacagacacatctcaacatcatcggttcagaggagactgcgtgaatcaggccatcatggtcaaattgctgcaaggaaaccactactaaagcacaccaataagaagaagacttgcttgggccaagaaacacgagcaatggacattagaccggtggatatctgtccttgggtctgatgagtccaagtttgagatttttggatccgagtgtcatgtctttgtgagacgaggagtagatgaacagattatctctgcatgtgtggttcccaccgtgaagcatggaggaggagatgtgatggggtgcgggtgctttgctattgacaatgtcagtgatttattcattcaagtcacacttaaccagcatgactaccacagcattctgcagcgatatgccatcccatctggtttgggcttagtcccactgtcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagagctatttgaccaagatggagtgctgcatcagatgacctggcctcgacCTCACCCAAATCGAGATGATTTGGGAttagttggatcgcagagtgaaggaaaagcagcctacaagttctcagcatatatgggaactcctacaagactgttggaaaaggattccaggtgaagctggttgagagaaagcaagggtggcaacttttgaagaataaaatatatattttattttaacacttgtggttactacatgattccatgtgttttttaataATTTTGTTGTCTTCTCCATTATtttactatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgagtccaaacttttgactggtactgtacattcaattccctggcaacagctccagtggacattcctgcagtcagcatgccaattgcccgctccctcagagatctgtggcattgttgtgtgaccaaactgcacattttcgagtagccttttattacccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1321259 True 1168 lncRNA 0.43 2 26049798 26064387

Neighbor

gene id symbol gene type direction distance location
LOC118938446 LOC106595012 coding upstream 1740 26044982 ~ 26048058 (+)
LOC110487413 NA coding upstream 79269 25966607 ~ 25970529 (+)
LOC110516920 LOC106578598 coding upstream 177026 25813029 ~ 25872772 (+)
LOC110516919 NA coding upstream 200132 25845283 ~ 25849666 (+)
LOC118938061 NA coding upstream 236878 25784839 ~ 25866420 (+)
LOC110487386 LOC106595012 coding downstream 23544 26087931 ~ 26095676 (+)
LOC110487402 NA coding downstream 77154 26141541 ~ 26155230 (+)
LOC118938455 NA coding downstream 189439 26253826 ~ 26255885 (+)
LOC110487414 samd3 coding downstream 239015 26303402 ~ 26314343 (+)
LOC110487384 NA coding downstream 309433 26373820 ~ 26379952 (+)
G1158422 NA non-coding upstream 78844 25848644 ~ 25970954 (+)
G1158491 NA non-coding upstream 99768 25949011 ~ 25950030 (+)
G1158539 NA non-coding downstream 7874 26072261 ~ 26085129 (+)
G1158562 NA non-coding downstream 64396 26128783 ~ 26139138 (+)
G1158640 NA non-coding downstream 156695 26221082 ~ 26227325 (+)
G1158650 NA non-coding downstream 172679 26237066 ~ 26237505 (+)
G1157972 NA other upstream 575820 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 586340 25462927 ~ 25463458 (+)
LOC110486053 polr3f other upstream 634817 25410869 ~ 25419361 (+)
G1157292 NA other upstream 944660 25082584 ~ 25105138 (+)
G1158563 NA other downstream 46109 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 99412 26163799 ~ 26217394 (+)
LOC110487383 LOC106564416 other downstream 1044738 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 1225850 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1428767 27493154 ~ 27768641 (+)

Expression


Co-expression Network