G1158539


Basic Information

Item Value
gene id G1158539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26072261 ~ 26085129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1321256
ATTCATGACATGTGAACAAACAAGCCTTTTCATACtttataatatacagtggggaaaacaagtatttgaaacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcatagatacacttcaaccgtgagagacagaatctaaaacaaaaatccagaaaatcacattgaatgatttttaagtaattaatttgcattttattgagacccagagttacttctgctgcagaggataagttcattagagttaccagcctcagaaattgctgcccaaataaatgcttcacaaagttgaatgaacagacacatctcaatatcaactgttcagaggagactgtgtgaatcaggccttcatggtcgaattgctgcaaagaaaccactactctaggacaccaaaaagaagaagagacttgggccaagaaacatgagcaagccttcacattgaccctgtacagGTAcctcctatatatagcctccacattgactctgtactggtacctcctatatatagcctcctgtatatagcctccacattgactctgtactggtacctcctgtatatagcctcctgtatataacctccacattgaccctgtactggtacctcctatatatagcctccacattgactctgtactggtacctcctgtatatagcctcctgtatatagcctccacattgactctgtactggtacctcctgtatatagcctcctgtatataacctccacattgaccctgtactggtacctcctatatatagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtacctcctatatatagcctcctgtatacagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtacctcctatatatagcctcctgtatacagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtacctcctgtacatagcctccacattgactctgtactggtaccccctgtatatagtctccacattgactctgtactggtaccccctgtatataacctccacattgactctgtactggtaccccctgtttatagcctccacattgactctgtactggtaccccctgtatatagcctccacattggctctgtactgttaccccctgtatttagcctccacattgactctgtactggtaccccctgtatatagtctccacattaactctgtactggtaccccctgtttatagcctccacattgactctgtactggtaccccctgtttatagcctccacattgactctgtactggtacctcctgtatatagcctccacattgactctgtactggtaccccctgtattttgcctcgttattgttttttattgtgttacttttttgaACTTTTTATTTTGGGAATATTTTCTTAACCCTTATTTTTCTCATctacgttgttggttaagggcttgtcagtaagcatttcacgttaagatctacacctgttgtattcagcgcatgtgacaaataatatttgattgtaACTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1321256 True 1691 lncRNA 0.42 2 26072261 26085129

Neighbor

gene id symbol gene type direction distance location
LOC110487393 NA coding upstream 5927 26058706 ~ 26066334 (+)
LOC118938446 LOC106595012 coding upstream 24203 26044982 ~ 26048058 (+)
LOC110487413 NA coding upstream 101732 25966607 ~ 25970529 (+)
LOC110516920 LOC106578598 coding upstream 199489 25813029 ~ 25872772 (+)
LOC110516919 NA coding upstream 222595 25845283 ~ 25849666 (+)
LOC110487386 LOC106595012 coding downstream 2802 26087931 ~ 26095676 (+)
LOC110487402 NA coding downstream 56412 26141541 ~ 26155230 (+)
LOC118938455 NA coding downstream 168697 26253826 ~ 26255885 (+)
LOC110487414 samd3 coding downstream 218273 26303402 ~ 26314343 (+)
LOC110487384 NA coding downstream 288691 26373820 ~ 26379952 (+)
G1158542 NA non-coding upstream 7874 26049798 ~ 26064387 (+)
G1158422 NA non-coding upstream 101307 25848644 ~ 25970954 (+)
G1158491 NA non-coding upstream 122231 25949011 ~ 25950030 (+)
G1158562 NA non-coding downstream 43654 26128783 ~ 26139138 (+)
G1158640 NA non-coding downstream 135953 26221082 ~ 26227325 (+)
G1158650 NA non-coding downstream 151937 26237066 ~ 26237505 (+)
G1158376 NA non-coding downstream 172696 26257825 ~ 26671072 (+)
G1157972 NA other upstream 598283 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 608803 25462927 ~ 25463458 (+)
LOC110486053 polr3f other upstream 657280 25410869 ~ 25419361 (+)
G1157292 NA other upstream 967123 25082584 ~ 25105138 (+)
G1158563 NA other downstream 25367 26110496 ~ 26115864 (+)
G1158612 LOC106586052 other downstream 78670 26163799 ~ 26217394 (+)
LOC110487383 LOC106564416 other downstream 1023996 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 1205108 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1408025 27493154 ~ 27768641 (+)

Expression


Co-expression Network