G1158562


Basic Information

Item Value
gene id G1158562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26128783 ~ 26139138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1321281
GGCTGAACATTgttgtgaaagaggaggaggatgtcacAGTAAAAAAAGAAGTAGAGGGTggggctgttacagtgaaagaagaagaagaagagaaagacgtttcagtgaaagaggaggaagacgcgttcagagtgaaagaggaggatgttacagtaaaagaagatgaggaaaataaagaggaggatgcagtttttggagtgaagatggaaggagagattactgtcacattgaaagatgaagaggaggagatgggagatctgattaacaccaGAGAGGGACCAGACTCTCACAGCGGGGAGACTCCTTCAGGGGAACCAGACCCAGAGACGCCCAA

Function

NR:

description
uncharacterized protein LOC110521943 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1321281 True 334 lncRNA 0.46 2 26128783 26139138

Neighbor

gene id symbol gene type direction distance location
LOC110487386 LOC106595012 coding upstream 33107 26087931 ~ 26095676 (+)
LOC110487373 LOC106608452 coding upstream 47865 26058164 ~ 26080918 (+)
LOC110487393 NA coding upstream 62449 26058706 ~ 26066334 (+)
LOC118938446 LOC106595012 coding upstream 80725 26044982 ~ 26048058 (+)
LOC110487413 NA coding upstream 158254 25966607 ~ 25970529 (+)
LOC110487402 NA coding downstream 2403 26141541 ~ 26155230 (+)
LOC118938455 NA coding downstream 114688 26253826 ~ 26255885 (+)
LOC110487414 samd3 coding downstream 164264 26303402 ~ 26314343 (+)
LOC110487384 NA coding downstream 234682 26373820 ~ 26379952 (+)
LOC110485120 NA coding downstream 293175 26432313 ~ 26449529 (+)
G1158539 NA non-coding upstream 43654 26072261 ~ 26085129 (+)
G1158542 NA non-coding upstream 64396 26049798 ~ 26064387 (+)
G1158422 NA non-coding upstream 157829 25848644 ~ 25970954 (+)
G1158640 NA non-coding downstream 81944 26221082 ~ 26227325 (+)
G1158650 NA non-coding downstream 97928 26237066 ~ 26237505 (+)
G1158376 NA non-coding downstream 118687 26257825 ~ 26671072 (+)
G1158349 NA non-coding downstream 125838 26264976 ~ 26807861 (+)
G1158411 NA non-coding downstream 177309 26316447 ~ 26542441 (+)
G1158563 NA other upstream 12919 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 257380 25813029 ~ 25872772 (+)
G1157972 NA other upstream 654805 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 665325 25462927 ~ 25463458 (+)
LOC110486053 polr3f other upstream 713802 25410869 ~ 25419361 (+)
G1158612 LOC106586052 other downstream 24661 26163799 ~ 26217394 (+)
LOC110487383 LOC106564416 other downstream 969987 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 1151099 27285432 ~ 27291404 (+)
G1158342 NA other downstream 1354016 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 1636981 27768154 ~ 27788573 (+)

Expression


Co-expression Network