G1158376


Basic Information

Item Value
gene id G1158376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26257825 ~ 26671072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1321079
aggtcaatacaacgcACACATATAAAGTGAATCAATTGAGTCTCTACGATAATGATGGTGGGTCAACAAATCACCCCcagatgattcgttgagagccacgacacaaaagtacaaaggtattttatagccaagatacaacCTACATGACCAACAATAGACACGTAGAAAGTGTCACAAGGTTAAgctttgtatgaaagatactctCTGCTGAGAATTATAAGTATCTGATGTAAAAACACTACTTtttgtgtagagaccagggtctggccctggggtcatctctccctggtaccatatagaacagaaacattaactcatgctctggaatgcggtcTCTTTAGGTTATCGCCCAAAAGACattgtaaatctcctgtcagtgttatctcccagaggcccatcctcagtagaacacacaggcACAATAGTTCTAAGAaccctctattctgttgcataaaacaaccatttaatgcaataaaagtattataacaATCTTGCAGTTTTGCTctgtgtccactgaaagttgactagtaacaacaactgggacataCAAGACACCTATcatgagacccactaaatctgcccaagaagaggaaaacaaaagaaaaacccacaacaaACTTACAGACAGGAAGTAAACCAAAAAAGTGGAGCAACTAAAtgtgttgactctccacatctatcaagacaactggagcactgggccagacactcttaaatagaacctggaccacctcaggtgaaacaccttcccactaacaagatggacaagccagcacaggtgtaacacatactgactaacgaggtgacaccaatctgTGCGCCCAACGTGCTAACGAGTTAGacgtgctaaagtccaacctcaaaacataaatggaaaaaccaaagcctgcAACACCTTCCCCCGTAAGACaacaaatatatcctatatttttgttgaacaagtttgctcaccaccaacagaaaacaacttgctaaaaacaagaaaaaaaacatactttttcattttttagaatcctaaaactcactagcttctagaactctcgtcccaTTGGAACAAGCCCAAACAAAACTAATCTCTAATAGGGAAGCAAATATGTGGAAatgaaatatgaggtgatttgaGTCATGCTTCTTTTAGTAGTGGAATAATGACAATTAGCACTTGAATGTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1321079 True 1173 lncRNA 0.40 2 26257825 26671072

Neighbor

gene id symbol gene type direction distance location
LOC118938455 NA coding upstream 1940 26253826 ~ 26255885 (+)
LOC110487402 NA coding upstream 102595 26141541 ~ 26155230 (+)
LOC110487386 LOC106595012 coding upstream 162149 26087931 ~ 26095676 (+)
LOC110487373 LOC106608452 coding upstream 176907 26058164 ~ 26080918 (+)
LOC110487393 NA coding upstream 191491 26058706 ~ 26066334 (+)
LOC110487400 NA coding downstream 4167 26675239 ~ 26690594 (+)
LOC110487360 NA coding downstream 53767 26704020 ~ 26753678 (+)
LOC118938063 NA coding downstream 142494 26813566 ~ 26817535 (+)
LOC118938064 NA coding downstream 177618 26848690 ~ 26872255 (+)
LOC110485124 NA coding downstream 304878 26975950 ~ 26979233 (+)
G1158650 NA non-coding upstream 20320 26237066 ~ 26237505 (+)
G1158640 NA non-coding upstream 30500 26221082 ~ 26227325 (+)
G1158562 NA non-coding upstream 118687 26128783 ~ 26139138 (+)
G1158539 NA non-coding upstream 172696 26072261 ~ 26085129 (+)
G1158909 NA non-coding downstream 23172 26694244 ~ 26695407 (+)
G1158946 NA non-coding downstream 118071 26789143 ~ 26789958 (+)
G1158400 NA non-coding downstream 127815 26798887 ~ 26897170 (+)
G1158998 NA non-coding downstream 227341 26898413 ~ 26918768 (+)
G1158612 LOC106586052 other upstream 40431 26163799 ~ 26217394 (+)
G1158563 NA other upstream 141961 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 386422 25813029 ~ 25872772 (+)
G1157972 NA other upstream 783847 25473122 ~ 25473978 (+)
G1157952 LOC106584892 other upstream 794367 25462927 ~ 25463458 (+)
LOC110487383 LOC106564416 other downstream 438053 26977083 ~ 27174368 (+)
LOC110485126 NA other downstream 619165 27285432 ~ 27291404 (+)
G1158342 NA other downstream 822082 27493154 ~ 27768641 (+)
LOC110485129 LOC106591690 other downstream 1105047 27768154 ~ 27788573 (+)
G1159435 NA other downstream 1109150 27780222 ~ 27786165 (+)

Expression


Co-expression Network