G1159781 (LOC106561441)


Basic Information

Item Value
gene id G1159781
gene name LOC106561441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28551842 ~ 28552803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1322632
ACTCCTTCATGTATGCATTGtctgatgtttgatcagagatcttttatcagagtatctcttgtcacactgatcacagctataaggtttctctcctgtgtgtgttctctggtgtgatgtcaGCTGGCCAGATCTACCAAAACTCTTGCCACATTggccacagctataaggtttctctcctgtgtgtgttctctggtgtagagtcagatGGCTAGATTGACCAAAAGTCTTCCCACATTGGCCACagctgtaaggtttctctcctgtgtgtgttctctggtgttgtgtCAGATGGCCAGAttgaccaaaactcttcccacattgaccacagctataagatttctctcctgtgtgtgttctctgatgaattttaatgcctgatgaggtgaatctcttcccacagtcagagcagcagtgagttcTCTTCCCTGTGGATCTCTGCAGGTGTTTATTAAGTTGTTCTGATccggagagactcttctctgcctcttcagcatcatgaggttgttgaggctccccagaggatccacaatAGTTAAGTATcg

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1322632 True 542 lncRNA 0.45 2 28551842 28552803

Neighbor

gene id symbol gene type direction distance location
LOC110487355 LOC106561190 coding upstream 51173 28472333 ~ 28500669 (+)
LOC110513252 NA coding upstream 203306 28338501 ~ 28698821 (+)
LOC118938258 NA coding upstream 214517 28336680 ~ 28337325 (+)
LOC110487363 LOC106594826 coding upstream 350248 28180784 ~ 28201594 (+)
LOC110487371 NA coding upstream 474240 28074969 ~ 28077602 (+)
LOC110487378 LOC106613297 coding downstream 43162 28595965 ~ 28603570 (+)
LOC118938254 NA coding downstream 51786 28604589 ~ 28608693 (+)
LOC110487366 NA coding downstream 154892 28707695 ~ 28713789 (+)
LOC118938259 LOC106566139 coding downstream 164015 28716818 ~ 28721736 (+)
LOC118938260 LOC106593417 coding downstream 198709 28751512 ~ 28753479 (+)
G1159779 NA non-coding upstream 1357 28544546 ~ 28550485 (+)
G1159741 NA non-coding upstream 56946 28479024 ~ 28494896 (+)
G1159742 NA non-coding upstream 65863 28483846 ~ 28485979 (+)
G1159715 NA non-coding upstream 83535 28458999 ~ 28468307 (+)
G1159717 NA non-coding upstream 98786 28446555 ~ 28453056 (+)
G1159821 NA non-coding downstream 77496 28630299 ~ 28632208 (+)
G1159547 NA non-coding downstream 107764 28660567 ~ 28700243 (+)
G1159847 NA non-coding downstream 117243 28670046 ~ 28671329 (+)
G1159849 NA non-coding downstream 119847 28672650 ~ 28780325 (+)
G1159684 NA other upstream 293868 28252530 ~ 28257974 (+)
G1159631 NA other upstream 426204 28119665 ~ 28125638 (+)
LOC118938246 LOC106595566 other upstream 686135 27863508 ~ 27865760 (+)
G1159435 NA other upstream 765677 27780222 ~ 27786165 (+)
G1159924 NA other downstream 265931 28818734 ~ 28819448 (+)
G1161908 NA other downstream 745955 29298758 ~ 29299656 (+)
si:ch211-126j24.1 LOC106585260 other downstream 811249 29266618 ~ 29370947 (+)
G1162364 NA other downstream 941559 29494362 ~ 29494902 (+)
G1162753 NA other downstream 1277951 29830754 ~ 29831296 (+)

Expression


Co-expression Network