G1161821


Basic Information

Item Value
gene id G1161821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29165036 ~ 29165237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1324978
GGATGTcaggggttcctactccagctggagctctacctggcaaccgtccacccggctccttcgggCCGTGAGAgcgtgtccgccctcgtctcctgtctctcagggaaagccctggagtgtgCCAACGCCGTATGGGGGAAGGAGAAGCGGTGTTGGACCAATTCAAGGATTTCACCCCCTGCTTCACCTGAACGTCTCGTCC

Function

NR:

description
uncharacterized protein LOC110512745

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1324978 True 202 lncRNA 0.61 1 29165036 29165237

Neighbor

gene id symbol gene type direction distance location
LOC110486062 LOC106585334 coding upstream 304431 28859535 ~ 28860605 (+)
LOC110485131 LOC106571816 coding upstream 390096 28768216 ~ 28774940 (+)
LOC118938260 LOC106593417 coding upstream 411557 28751512 ~ 28753479 (+)
LOC118938259 LOC106566139 coding upstream 443300 28716818 ~ 28721736 (+)
LOC110487366 NA coding upstream 451247 28707695 ~ 28713789 (+)
rrp36 rrp36 coding downstream 3164 29168401 ~ 29172521 (+)
si:ch211-126j24.1 LOC106585260 coding downstream 101381 29266618 ~ 29370947 (+)
LOC110486069 klc4 coding downstream 208064 29373301 ~ 29409473 (+)
LOC110486070 hebp1 coding downstream 254126 29419363 ~ 29436445 (+)
LOC110486071 LOC106564807 coding downstream 278886 29444123 ~ 29485813 (+)
G1161592 NA non-coding upstream 305930 28858872 ~ 28859106 (+)
G1161567 NA non-coding upstream 323439 28841377 ~ 28841597 (+)
G1161564 NA non-coding upstream 325353 28838493 ~ 28839683 (+)
G1159923 NA non-coding upstream 328416 28818272 ~ 28836620 (+)
G1159922 LOC106586027 non-coding upstream 350546 28814165 ~ 28814490 (+)
G1161768 NA non-coding downstream 7518 29172755 ~ 29173426 (+)
G1161822 NA non-coding downstream 12061 29177298 ~ 29177894 (+)
G1161823 NA non-coding downstream 13853 29179090 ~ 29179331 (+)
G1161825 NA non-coding downstream 16839 29182076 ~ 29182279 (+)
G1161833 NA non-coding downstream 30379 29195616 ~ 29195821 (+)
G1159924 NA other upstream 345588 28818734 ~ 28819448 (+)
LOC110513252 NA other upstream 466215 28338501 ~ 28698821 (+)
LOC110487355 LOC106561190 other upstream 665830 28472333 ~ 28500669 (+)
G1159684 NA other upstream 907062 28252530 ~ 28257974 (+)
G1159631 NA other upstream 1039398 28119665 ~ 28125638 (+)
G1161908 NA other downstream 133521 29298758 ~ 29299656 (+)
G1162364 NA other downstream 329125 29494362 ~ 29494902 (+)
G1162753 NA other downstream 665517 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1949074 31113781 ~ 31119681 (+)

Expression


Co-expression Network