G1161961


Basic Information

Item Value
gene id G1161961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29437799 ~ 29438918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1325130
cactcactcaaactccgtcgccgcgcgcttgtcccaggaaccttcttttcgttcccgttcctactcgtctggccgttcttcagtgggctcactctgccaagttagccggccaccctggcgttcggggtacgcttgcttccattcgccagcgcttttggtggcccacccgggagcatgacacgcgtcgcttcgtggctgcttgttcggtctgcgcgcagactaagtccggtaactctcctcctgccggccgtctcaggccgcttcccattccctctcgaccgtggtctcacatcgccttagattttgtcaccggactgccttcgtcagcggggaagactgttattcttacggttgtcgacaggttctctaaggcggctcatttcattccccttgctaagcttccttctgctaaagagacggcacaaatcatcatcgagaatgttttcagaattcatggccttccgtcagacgtcgtttcggacagaggtccgcaattcacgtctcaattttggagggagttttgccgtttgattggggcttccgtcagtctctcttccggctttcacccccagtctaacggtcaagcagaacgggccaatcagactattggtcgcatcttacgcagtctttcttttcgcaaccctgcgtcttggtcagaacagctcccctgggcagaatacgcccacaactcgcttccttcgtctgcgaccgggctatctccttttcagagtagcctcgggtaccagcctccgctgttctcatctcagttcgccgagtccagcgtcccttccgctcaggcttttgtccaacgttgcgagcgcacctggaagagggtcaggtctgcactttgccgttatagggcgcagactgtgagggctgctaataagcgtagaactaagagtcctagatattgtcgcggtcagagagtttggctctccactcagaaccttccccttaagaccacttctcgcaagttgaccccgcggttcattggtccgttccgtatttctcaggtcattaatcctgtcgcagttcgactttttcttccgcgataccttcgtcgcgtccacccggtcttccatgtctcctgtatcaagcccgttcttcgcgcccccgctcg

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1325130 True 1120 lncRNA 0.56 1 29437799 29438918

Neighbor

gene id symbol gene type direction distance location
LOC110486070 hebp1 coding upstream 9233 29419363 ~ 29436445 (+)
LOC110486069 klc4 coding upstream 28326 29373301 ~ 29409473 (+)
si:ch211-126j24.1 LOC106585260 coding upstream 70051 29266618 ~ 29370947 (+)
rrp36 rrp36 coding upstream 265278 29168401 ~ 29172521 (+)
LOC110486062 LOC106585334 coding upstream 577194 28859535 ~ 28860605 (+)
LOC110486071 LOC106564807 coding downstream 5205 29444123 ~ 29485813 (+)
LOC110486072 LOC106585018 coding downstream 59144 29498062 ~ 29591905 (+)
LOC110486077 LOC106564801 coding downstream 216638 29655556 ~ 29706148 (+)
ncx ncx coding downstream 403087 29842005 ~ 29894155 (+)
LOC110485133 LOC106608247 coding downstream 499332 29938250 ~ 30038173 (+)
G1161937 NA non-coding upstream 75640 29361806 ~ 29362159 (+)
G1161933 NA non-coding upstream 89377 29348158 ~ 29348422 (+)
G1161931 NA non-coding upstream 90267 29347229 ~ 29347532 (+)
G1162361 NA non-coding downstream 53674 29492592 ~ 29493126 (+)
G1162365 NA non-coding downstream 56334 29495252 ~ 29495839 (+)
G1162388 NA non-coding downstream 78790 29517708 ~ 29545477 (+)
G1162396 NA non-coding downstream 102960 29541878 ~ 29543367 (+)
G1161908 NA other upstream 138143 29298758 ~ 29299656 (+)
G1159924 NA other upstream 618351 28818734 ~ 28819448 (+)
LOC110513252 NA other upstream 738978 28338501 ~ 28698821 (+)
G1162364 NA other downstream 55444 29494362 ~ 29494902 (+)
G1162753 NA other downstream 391836 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1675393 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2562833 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 3276338 32714937 ~ 32722676 (+)

Expression


Co-expression Network