G1162361


Basic Information

Item Value
gene id G1162361
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29492592 ~ 29493126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1325582
accaagcctgacctgctgaggagtgacggactccatcctagctggaggggtgctctcattttatctaccaacatagacagggctctaactcctctagctccacaatgaaatagggtgcaggccaggcagcaggctgttagccagcctgccagcatagtggagtctgccactagcacagtcagtgtagtcagctcagctatcaccattgagaccgtgtctgtgcctcgacctaggttgggcaaaactaaacatggcggtgttcgccttagcaatctcactaggataaagaccacctccattcctgtcattattgaaagatatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatcccccgtgcatcccgcaaaggcggag

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1325582 True 535 lncRNA 0.48 1 29492592 29493126

Neighbor

gene id symbol gene type direction distance location
LOC110486071 LOC106564807 coding upstream 6779 29444123 ~ 29485813 (+)
LOC110486070 hebp1 coding upstream 64026 29419363 ~ 29436445 (+)
LOC110486069 klc4 coding upstream 83119 29373301 ~ 29409473 (+)
si:ch211-126j24.1 LOC106585260 coding upstream 124844 29266618 ~ 29370947 (+)
rrp36 rrp36 coding upstream 320071 29168401 ~ 29172521 (+)
LOC110486072 LOC106585018 coding downstream 4936 29498062 ~ 29591905 (+)
LOC110486077 LOC106564801 coding downstream 162430 29655556 ~ 29706148 (+)
ncx ncx coding downstream 348879 29842005 ~ 29894155 (+)
LOC110485133 LOC106608247 coding downstream 445124 29938250 ~ 30038173 (+)
LOC110486079 LOC106564790 coding downstream 547147 30040273 ~ 30122084 (+)
G1161961 NA non-coding upstream 53674 29437799 ~ 29438918 (+)
G1161937 NA non-coding upstream 130433 29361806 ~ 29362159 (+)
G1161933 NA non-coding upstream 144170 29348158 ~ 29348422 (+)
G1162365 NA non-coding downstream 2126 29495252 ~ 29495839 (+)
G1162388 NA non-coding downstream 24582 29517708 ~ 29545477 (+)
G1162396 NA non-coding downstream 48752 29541878 ~ 29543367 (+)
G1162471 NA non-coding downstream 193416 29686542 ~ 29687002 (+)
G1162478 NA non-coding downstream 205921 29699047 ~ 29699261 (+)
G1161908 NA other upstream 192936 29298758 ~ 29299656 (+)
G1159924 NA other upstream 673144 28818734 ~ 28819448 (+)
LOC110513252 NA other upstream 793771 28338501 ~ 28698821 (+)
G1162364 NA other downstream 1236 29494362 ~ 29494902 (+)
G1162753 NA other downstream 337628 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1621185 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2508625 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 3222130 32714937 ~ 32722676 (+)

Expression


Co-expression Network