G1162478


Basic Information

Item Value
gene id G1162478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29699047 ~ 29699261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1325726
agccaatACTATgatccgtcctcccctcagcagcctccactgaatcCTATGTGTACCACCTCTCCACTCTAGGCTGATTAAACACTAGGTGGGTATTGTCTGTCATCAtcagtctctctcttcttcccatGATCTTTTTCTCCTCTTTATTTCCCTTTCgttgtctctatccctctcatgGCCTCTCCCTTCCCCTGATCGATCTGAAACCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1325726 True 215 lncRNA 0.48 1 29699047 29699261

Neighbor

gene id symbol gene type direction distance location
LOC110486072 LOC106585018 coding upstream 107142 29498062 ~ 29591905 (+)
LOC110486071 LOC106564807 coding upstream 213234 29444123 ~ 29485813 (+)
LOC110486070 hebp1 coding upstream 270481 29419363 ~ 29436445 (+)
LOC110486069 klc4 coding upstream 289574 29373301 ~ 29409473 (+)
si:ch211-126j24.1 LOC106585260 coding upstream 331299 29266618 ~ 29370947 (+)
ncx ncx coding downstream 142744 29842005 ~ 29894155 (+)
LOC110485133 LOC106608247 coding downstream 238989 29938250 ~ 30038173 (+)
LOC110486079 LOC106564790 coding downstream 341012 30040273 ~ 30122084 (+)
LOC110486080 LOC106584788 coding downstream 431576 30130837 ~ 30142410 (+)
LOC110486081 LOC106584808 coding downstream 478450 30177711 ~ 30239246 (+)
G1162471 NA non-coding upstream 12045 29686542 ~ 29687002 (+)
G1162388 NA non-coding upstream 153570 29517708 ~ 29545477 (+)
G1162396 NA non-coding upstream 155680 29541878 ~ 29543367 (+)
G1162365 NA non-coding upstream 203208 29495252 ~ 29495839 (+)
G1162361 NA non-coding upstream 205921 29492592 ~ 29493126 (+)
G1162449 NA non-coding downstream 8676 29707937 ~ 29708562 (+)
G1162447 NA non-coding downstream 14274 29713535 ~ 29719133 (+)
G1162494 NA non-coding downstream 43954 29743215 ~ 29750349 (+)
G1162740 NA non-coding downstream 125948 29825209 ~ 29826036 (+)
G1162744 NA non-coding downstream 127687 29826948 ~ 29827170 (+)
G1162364 NA other upstream 204145 29494362 ~ 29494902 (+)
G1161908 NA other upstream 399391 29298758 ~ 29299656 (+)
G1159924 NA other upstream 879599 28818734 ~ 28819448 (+)
LOC110487355 LOC106561190 other upstream 1199841 28472333 ~ 28500669 (+)
G1162753 NA other downstream 131493 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1415050 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2302490 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 3015995 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 3529852 33001356 ~ 33230495 (+)

Expression


Co-expression Network