G1162806 (LOC106585147)


Basic Information

Item Value
gene id G1162806
gene name LOC106585147
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29914486 ~ 29916624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1326077
GCTGAGTTGAACATACATAACCTGCAAGGTCCACACAAGCCATTCAAGGTCCCTACAAGTCTTCCAGGTCAGATAGAGTTGTTGCGAAAGCTGGCCATTCCATGGGGCAGCAACTAACTTTCAGAGCCCACCCCTCACTGTTGGCTGCTCAGAATATCTGTGATAATGGTTCAACACAAAAGTCTTACATCCATTCAAGCGGTGTCAACATTATCTCATCCAGTTTACACTGTTTTCACATTTCAATGTAGAATTGTGCACCATTTGTGTTGGGCGAGAAAAATGACGTTCCTCAACTATGTAAGCAACAAACCCTGTAGTCCTTTGCCTATCATTGTCAGCATTCTTCTCACAGTCTGGCAAATTATTAGTGATTATGCCTCATCTGTTTGGGAAGGGACTGGTTAATGGGTTTGCTAAAAACTTTGTACAATTTGATTGCCACAACTGAAATTACCAATCGAATCCATTGGATCTCATAGACTGTGgattacagtttttttcaatcactttggtgcaattttcacaagtatgtggtacacaactccaaacacaaaaatctaaacaGATAATGAAAATGGCTCATGTTTCAAAACTTCCAGCATAAATTGATGTCAAATTGATACATTTGGGTAAAAATGTAGACATTTACAGTGTTCAACAGTTATAAAACTATATATGTTAACTAGGCAGTACATAATTGTGGTTCAGTCATTTTGAGCAGTTTGATTAAGTGATAGTTTATAGTATTGTTAACAAATAACAAGAAACTAATATCAAAAGTAAAGTGAATATTGCATTTTGAAaagcagatatatatatattgaatattTATCTAAATTGAAAAGGTGATATGGTGCAGTGAACAAGTGACGTTGTGAATTTGTTTGTTGTACTCAGTCAattaaaaatgtgcttaaagTTTTGAAACATGAGCGATTGTGATGATCTGTTTTGATTTTTGTGCTAGTTGCGAAAATTTACCACATACTAATGAAAATTGCGCCAAAGTGattgaaaaaaacaacaattgaaAGTGGTAGTTCAAATGACTATATGGTGAGCCTATCATTATCTGATGTATTggtgacaaaaaaaatgtgcttgtGGTATTTGAGGAAAACTTTGATTTTGCAttaatgactcaggggtgaaagaTGTGTGAAACCCCGATGAATGCACAGTCAAAAGTTCTGAACATAAGATAGGGGGCATTACACATGTTATCAGTTTAGAGTTTTGTACTTAAGAGTTTTGAAAATATACCACTTACATCTGAAAAAAAGGGTTCTTGCTTTCAAAGTGATACTAGTATTTTTATACAATGTCCATTTGATTCAATCTTACCAAACCACCAATAAGAAGTATGCCTTTTTCATATATATggtaatatatacacacatgttttatgtgtgtgtggtatgcCTGTGTGGGTATTTACGTTGTTTCATGTTATTCACTCTCATGTTGTTCTCCAtgtcttggagagagagagagagacagcgagagagagagaactaacaatttgtgtgtgtacttgtgtacGGGTGTGTAGGTCCATATGTATGTGTGAGTTTGCCTGTgtgcacatacaaacacacataaataacacatcataacacctGCACCTTGCATAACACCTCGATAAAGGATGATGAGAGTCCACAAAAGAGCAACAAGATTCCCACATCTCACTGAAACACTATGTTGTCATCTCTGGTTTCATAAAAATAAAGCATCTCCTCTTATATTGGTTTTCAGTCAGCAACAAAATGTCCACACCAACAATTCATCCCCCCCCGAATCTACAGGGGCCACTCAATTCTCTCACACTGCTCATACCGCTCATACTGAGGACTCCCGTGCGGTTTTGGAGTGCAGGGCCTTGGTTTGGCTGAGGAAGGGGTAGGTGGTGCTGAGGCAGCCTGATGCCACGGTCAGTCCCAGGCTGACCCAGGCGCAGAAGATGGACCAGCCGTAGCCATGGTCCACGTCGCCGGGCAGTCCGTAGATGAAGGGTGGGTTCCGGGAGAGGTCATAGGAGACGCTGGCGGCGTAGGTGCACAAGGAGATGGTGCAGAAGATCCCTGGAGGGGACAAATTGTAACTTCCAAGATTT

Function

NR:

description
transmembrane protein 178A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1326077 True 2119 lncRNA 0.39 2 29914486 29916624

Neighbor

gene id symbol gene type direction distance location
ncx ncx coding upstream 20331 29842005 ~ 29894155 (+)
LOC110486077 LOC106564801 coding upstream 208338 29655556 ~ 29706148 (+)
LOC110486072 LOC106585018 coding upstream 322581 29498062 ~ 29591905 (+)
LOC110486071 LOC106564807 coding upstream 428673 29444123 ~ 29485813 (+)
LOC110486070 hebp1 coding upstream 485920 29419363 ~ 29436445 (+)
LOC110485133 LOC106608247 coding downstream 21626 29938250 ~ 30038173 (+)
LOC110486079 LOC106564790 coding downstream 123649 30040273 ~ 30122084 (+)
LOC110486080 LOC106584788 coding downstream 214213 30130837 ~ 30142410 (+)
LOC110486081 LOC106584808 coding downstream 261087 30177711 ~ 30239246 (+)
LOC110486082 LOC106584819 coding downstream 347419 30264043 ~ 30283045 (+)
G1162757 NA non-coding upstream 81974 29832222 ~ 29832512 (+)
G1162755 NA non-coding upstream 82392 29831843 ~ 29832094 (+)
G1162748 NA non-coding upstream 85896 29828358 ~ 29828590 (+)
G1162746 NA non-coding upstream 86939 29827334 ~ 29827547 (+)
G1162744 NA non-coding upstream 87316 29826948 ~ 29827170 (+)
G1162870 NA non-coding downstream 91537 30008161 ~ 30008382 (+)
G1162878 NA non-coding downstream 105241 30021865 ~ 30022187 (+)
G1162879 NA non-coding downstream 106026 30022650 ~ 30022943 (+)
G1162942 NA non-coding downstream 247170 30163794 ~ 30172276 (+)
G1162753 NA other upstream 83190 29830754 ~ 29831296 (+)
G1162364 NA other upstream 419584 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 543539 29266618 ~ 29370947 (+)
G1161908 NA other upstream 614830 29298758 ~ 29299656 (+)
G1159924 NA other upstream 1095038 28818734 ~ 28819448 (+)
LOC110486104 chchd5 other downstream 1197687 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2085127 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 2798632 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 3312489 33001356 ~ 33230495 (+)
G1166318 NA other downstream 3323329 33239953 ~ 33249208 (+)

Expression


Co-expression Network