G1163989


Basic Information

Item Value
gene id G1163989
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31189977 ~ 31254788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1327443
ttttgactggtactgcatgtaCACAGATGTAAGCGGAAGAATATACTCGGTTTACAATCCCACGTAGGTGTAcacttcctctctggcaactagTAGCAGACAACCCACCcccaacaaataaaaaatatgtaaCTAAATATGTAgctaaataactcaaatgtaaAACATGTCAAGGTGTTCTGAATGATGGACTGATTATAATGTGGAGGGTGACAATGGTAATACGTGTACATGATGAGTGAATATAAAAGTCAAGACTTACGAGTTGACCAAAGAGAGTTCAAAATTATCGAAGTCCCGGAAGATCTCGCTGTAGCGCTTAGTCTCTGATTTGTTGGGGACCTTCACCTCTGGGGTAAAAGATGGATGACAAACATATGAGCAAGAGAGGCCAAATTATCACTCTTTTCTTTTCATaaaataaacattacacacaaaacacacaagtTGAAATTGCTTTTTTGCAGCTCCCAAAAAAgttatctgtaaaaaaaaaaaaagcttacaAAATATCTTCTATTTTTAGAAATAACAAATAAAGGGGTAAACCAACAGCCAACAAACACCCAGTCATAAAACAATGTGTGAGGAAATAAAGAAGTTTGTGGATTTgaaggttggtggtggctAAGGTTATGAAAAGGGTTATTCATGTGCATTTTGTGGTATTGAGCTAGCGCCCAATTGACTGCCATTCACTCCTTGAAGGAGAgctctccttgtcccagaatcGCCCAGAATGCACCGTGTGAGTCTACTGGGTGAAGCGTTATACATTCCTACATTCAttgcccaatgggactcccattTCATCCTTTCTCTAATATCTCTGGTACAGTCTCAGCTGGTCTCAGTTCGATTCCTTCCCCTCCCTTTGCCCCTAACCATTTCACGCTTGCATGTCTGTAAGGTGGAAGAAATATGGTGGAAGATTTACCCCTAGCTACACTGCTTATACCGACCCAAAAGATAAAGATACATGCCAACATTGAGGGGTTATGGCCAAGGGGAGACATATGGCAACAATATGGGATCAGATGTCTGATGTCACAGACAGGCTAGTGGCTGGAAGCAGGCCTCTTCACTCCCATGACACTGAAGGTGCTGCTAGCTATCTTCTCGTAGAGCAGGAACATGAGGGCAGCGGTCAGGACGGTCTGCAGGAGTTTAGCTTCCAGGCCTTTGAACAGGCCCAGCATG

Function

NR:

description
peroxisomal membrane protein PMP34-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1327443 True 1200 lncRNA 0.42 2 31189977 31254788

Neighbor

gene id symbol gene type direction distance location
LOC110486104 chchd5 coding upstream 70296 31113781 ~ 31119681 (+)
LOC110485141 LOC106600922 coding upstream 227658 30904798 ~ 30962319 (+)
LOC110486099 NA coding upstream 337373 30850580 ~ 30852604 (+)
LOC110486087 LOC106584892 coding upstream 591274 30579918 ~ 30598703 (+)
LOC118938065 LOC106564780 coding upstream 637324 30523932 ~ 30552653 (+)
LOC110486114 NA coding downstream 13034 31267822 ~ 31270431 (+)
LOC110486119 LOC106600898 coding downstream 154338 31409126 ~ 31442138 (+)
LOC110486123 LOC106607440 coding downstream 235029 31489817 ~ 31513332 (+)
LOC110486128 LOC106607447 coding downstream 387594 31642382 ~ 31649841 (+)
LOC110486130 LOC106607449 coding downstream 411452 31666240 ~ 31673890 (+)
G1163962 NA non-coding upstream 41311 31148280 ~ 31148666 (+)
G1163854 NA non-coding upstream 104646 30985962 ~ 31085331 (+)
G1163914 NA non-coding upstream 113466 31075458 ~ 31076511 (+)
G1163814 NA non-coding upstream 291345 30898145 ~ 30898632 (+)
G1164069 NA non-coding downstream 73964 31328752 ~ 31338410 (+)
G1164055 NA non-coding downstream 76269 31331057 ~ 31335655 (+)
G1164076 NA non-coding downstream 100407 31355195 ~ 31357298 (+)
G1164119 NA non-coding downstream 182517 31437305 ~ 31496657 (+)
G1164096 NA non-coding downstream 188486 31443274 ~ 31444634 (+)
G1162753 NA other upstream 1358681 29830754 ~ 29831296 (+)
G1162364 NA other upstream 1695075 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 1819030 29266618 ~ 29370947 (+)
G1161908 NA other upstream 1890321 29298758 ~ 29299656 (+)
LOC110486134 LOC106600876 other downstream 746963 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 1460468 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1974325 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1985165 33239953 ~ 33249208 (+)
G1166779 NA other downstream 2535852 33790640 ~ 33803665 (+)

Expression


Co-expression Network