G1165817


Basic Information

Item Value
gene id G1165817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32665664 ~ 32674186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1329467
GATACATTTGACTTGTTTTAATGGCTTTCCTTTATGGATTAGTAGGCTGGCTATAGGACTAATTGTACTGCCATCCGTGCATATGTCCTGAGCATGTTTAATACAAATCTTAATGTCcgctatgggggtgccacaaggttaaattctcgggctgactcttttctatgaatatatcaatgatgtagctcttgctgctgatgattctctgatccacctctacgcagacgacaccattctgtagacATCTAGTCCttgtttggacactgtgctaacaaacctccaaacgagcttcaacgccatacaacactcattccgtggcctccaactgcttttaattgctagtaaaactaagtgcatgctcttccaTCGATTGCTGCCGCACCCTCTTGCATTAATAGCAACACGACTCTGGACGgttttgacttagaatatgtgaaacaactacaaatacctaggtgtctggttagcctgtaaactctccttccagactcacattaagcatctccaaccccaaattaaatctagaatcggcgtcctacttcacaacaaagcctccatcacccatgctaccaaacataccctcgtaaaactgacaatcctaccaatccttgacttcggcgatgtcatttactaAATATCCTCCTACACTCTActtagcaaactggatgtagtctatcatcgcgccatccgttttgtcaccaaagccccatatactacccaccgctgcgacctgtatgctctctctggctggccctcactacatattcgttgccaaacccactggctccaggttatctatacgtttttgctaggtaaagtcccgccttattcCAAATcagtggtcaccatagcaacacccacccttagcacgccctccagcaggtatatgcaggtatatttcactggccaTCCGCAAAGCCAACACTTGCTTTAGCCgccattccttccagttctctgctgccaatgactggaattaattgcacaaatcactgaagctggagacacatgtctccctctctaactttaagcatcagctgtcagagcagcttaccgatcactgcagctgtacacagccaatctgtaaatagcaaaccaaactacctcatccccatattattacttaccctcttgctcttttgcaccccagtatgtccacttgcacatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1329467 True 1165 lncRNA 0.45 2 32665664 32674186

Neighbor

gene id symbol gene type direction distance location
LOC110487530 LOC106595256 coding upstream 98881 32552247 ~ 32566783 (+)
gh2 gh2 coding upstream 136813 32525237 ~ 32528851 (+)
LOC100136790 scn4aa coding upstream 159739 32462211 ~ 32505925 (+)
LOC118938569 NA coding upstream 183073 32482538 ~ 32482591 (+)
LOC110486139 LOC106607458 coding upstream 295016 32290341 ~ 32370648 (+)
ifn2 ifn2 coding downstream 40751 32714937 ~ 32722676 (+)
LOC118938068 NA coding downstream 145860 32820046 ~ 32824535 (+)
LOC110485150 LOC105907864 coding downstream 151036 32825222 ~ 32826023 (+)
LOC110486141 LOC106607465 coding downstream 152306 32826492 ~ 32843099 (+)
si:dkey-283b1.6 NA coding downstream 169110 32843296 ~ 32845896 (+)
G1165768 NA non-coding upstream 75324 32574851 ~ 32590340 (+)
G1165755 NA non-coding upstream 115207 32550097 ~ 32550457 (+)
G1165740 NA non-coding upstream 123325 32542043 ~ 32542339 (+)
G1165475 NA non-coding upstream 157528 32506892 ~ 32508136 (+)
G1165840 NA non-coding downstream 39055 32713241 ~ 32713805 (+)
G1165885 NA non-coding downstream 113798 32787984 ~ 32788190 (+)
G1165893 NA non-coding downstream 129707 32803893 ~ 32804233 (+)
G1165899 NA non-coding downstream 140432 32814618 ~ 32814867 (+)
G1165902 NA non-coding downstream 144809 32818995 ~ 32819202 (+)
LOC110486134 LOC106600876 other upstream 554931 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1545987 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2834368 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3170762 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 3294717 29266618 ~ 29370947 (+)
LOC110486146 LOC106607468 other downstream 554927 33001356 ~ 33230495 (+)
G1166318 NA other downstream 565767 33239953 ~ 33249208 (+)
G1166779 NA other downstream 1116454 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 2007002 34680909 ~ 34687670 (+)

Expression


Co-expression Network