G1165840


Basic Information

Item Value
gene id G1165840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32713241 ~ 32713805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1329493
acactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatcagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggcgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1329493 True 368 lncRNA 0.43 2 32713241 32713805

Neighbor

gene id symbol gene type direction distance location
LOC110487530 LOC106595256 coding upstream 146458 32552247 ~ 32566783 (+)
gh2 gh2 coding upstream 184390 32525237 ~ 32528851 (+)
LOC100136790 scn4aa coding upstream 207316 32462211 ~ 32505925 (+)
LOC118938569 NA coding upstream 230650 32482538 ~ 32482591 (+)
LOC110486139 LOC106607458 coding upstream 342593 32290341 ~ 32370648 (+)
ifn2 ifn2 coding downstream 1132 32714937 ~ 32722676 (+)
LOC118938068 NA coding downstream 106241 32820046 ~ 32824535 (+)
LOC110485150 LOC105907864 coding downstream 111417 32825222 ~ 32826023 (+)
LOC110486141 LOC106607465 coding downstream 112687 32826492 ~ 32843099 (+)
si:dkey-283b1.6 NA coding downstream 129491 32843296 ~ 32845896 (+)
G1165817 NA non-coding upstream 39055 32665664 ~ 32674186 (+)
G1165814 NA non-coding upstream 40439 32657612 ~ 32672802 (+)
G1165768 NA non-coding upstream 122901 32574851 ~ 32590340 (+)
G1165755 NA non-coding upstream 162784 32550097 ~ 32550457 (+)
G1165740 NA non-coding upstream 170902 32542043 ~ 32542339 (+)
G1165885 NA non-coding downstream 74179 32787984 ~ 32788190 (+)
G1165893 NA non-coding downstream 90088 32803893 ~ 32804233 (+)
G1165899 NA non-coding downstream 100813 32814618 ~ 32814867 (+)
G1165902 NA non-coding downstream 105190 32818995 ~ 32819202 (+)
LOC110486134 LOC106600876 other upstream 602508 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1593564 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2881945 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3218339 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 3342294 29266618 ~ 29370947 (+)
LOC110486146 LOC106607468 other downstream 515308 33001356 ~ 33230495 (+)
G1166318 NA other downstream 526148 33239953 ~ 33249208 (+)
G1166779 NA other downstream 1076835 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1967383 34680909 ~ 34687670 (+)

Expression


Co-expression Network