G1165914


Basic Information

Item Value
gene id G1165914
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32853923 ~ 32858140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1329578
CATCATCAAATGCATAGTTCATTTTCCTTTAAACAATacactgttactgtagttagcgTTTGCCTCTAGTCTATTCTCTATCTACATTCACAGTCTGTCATTTACAGTACATCTAGAAACTGTGACTGATACACAGTCAAATACAGAGGCATCTTGAAATTGTTCAATCATGAATTCATCTAATTGAAATCTCCAAACTCATATTCTTGGTGTTTGAAAATGCCATGGATACATGTGAGCATCATGGAATGTAGAAACCATACTAAAAATAAGAGCCCATGACCTTACACTCATCGGGAGTACACAAACTTGTCATTGTTGTGTGTCGTGTGTCATTCCTCTGGAGTTTCCAGGGTCATATTTATTAGGGCACATTATAGCTAAATGTTtcgcaacagaaaacaaaaaaacaagcgTATCCTATTGGAGAAGTAGTACATcctcagtctgttttcttctgtttcgtGTCTAGTGCCTTTAGCTTTCTCTTTCCCAAACGAATTATCACCAAATTTCCCAAAGCCTGGGGTGCATCAATTTCAACTGACCCAATAGACCACGCATCCTGTACTACTGCATCACAAGGTCCTCTGTTGCGAAAGTGTAATAAAGAGGTCTGCCCAGTTGAACAAGTAAAACGGCTCCAGAGTTTTACTTGATGGGTTCCTTGCTGTTGGTTACCCAGAAGGCCTGATGAATGGCTCCAGAAGGCCTTCCTTGTAACCAACATCAAGCAACCCATCGTGTAAAAATCTGGAGACGTTTATTTGTCAaattggtgtgtactgtactgtacagcagACCTGGGTggaaatagtatttttttttttttataaaatagaAAGAAGGCTTTTGACACATCAAAAACAAATATAAAAAGTGCCCGTGTGGTCACATAAATAAAGGTGGTACTTACAGTCTATCTGTCATACACATCTCTCTGTGTATCTACATGCTCTCTTCAAATTATTTGAATGTTTTATGTTCACACCTCAGCGTCTTGCGTTTTTGAAATGATAGAAAAAAGAAATACTCAACAGTAGGTGTCAAAAAGGGTTTCAACTTGAACTCGCCGTACAAAAAATAGAATTTGGTAATAAAAATAGAATTTGGGGAATAAGACAGCTGGCTCCctttgagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattctgaatGTCCATTTAATGATTCATGTAAACATAGACAAACTACTGCTGACCTAAAGAATCAATGTAGCGAACATGATTATGGTTAAGACACTCTGCAACCACacgaatgcacgcacacacagacacacacacatgcacacacacatgcacacacacacaccagaatcaCATAATGTCCAAACAAGAAAATCCTTGACGTTTTGTCGACAAATTTCCAAAAGCAATATGTACACAGCAAAAAGAATGCTGTCAGTTCAGTCTTATGTATGGGGTCCAAAGGTCAGAGGTCCAGAGGTCACTGTGATGATGAACCAGCCTCTTGTCCTTCTGTCTCTCACTAGAAGACCCAAGTGACTGGGACCCAATGCTGGGTAGCAGAGACCTTCTCCAGAGCTGCCTTCAGGTTCCTGTAGCTCTCGTCCAGGTTGTCGTTGACGATGGTGAGGTCAAAGTAGTGTCCGTATGCCGTCTGGATACGGGGGCTCTCGTCCACTGTTCTCTTTAGCTCTGAGTCCTACAGAGAACAAAGACGGAGGTTGATAGAACTTAGAGTAACAGGAAGGGAAGAGGCCCCGCACAAGCTAATTAGTTATGTTTATGAGGCGCCAATAGCTACGAACCTGGCGGTTCAGACATGTAGCTATTGAGCAACGTTTGGGCGTTTCAGCTTTACAGCAAGTTGTGGCCTTGGGTCTATAACGTTCTAGCGGTGCAAAGCATAGTTCTACCTGAACTAGTCATGTTCACTGTTGCTATTTGAATATATAAATGATAGAATAACACTATTGTACCCAGATAAAGTCAGAATACATCCTGCATCAAGAAACGTATTATGATCATCAGACGAATGACTGTCGTCACTGAACAACGATGTGACATCGTTTACTTCTGACATTTCTGACAGTGTTGTCGGCAAAGACACGTCCTGATTCGTCCGTCTGCATTTGTTCAGGCTTGTGATTGGATAGCTCCAAGTTCAAATGGGTTCATACAGTTCGAACTTTCTAGTTTTGACTTTTTTTCCCCACTTGTACTTTTTCAAAAATCTAACTTCACAGAtgtacagtataaagaaccaTCTGAAGATCTATTAAATGTGGCTCACTCATttttgacaacaaaaaaatcagTTGTGTGAATTTGGATGGATTTCCTTTAgttggtgggccattcttgatacacacgggagacagcgtgaaaaacccagcagcattgcagttcttgacacaaaccaatgtgcctggcacctactaccatgccccgttcaaagtcacttaaatgttttgtctttcccattcaccctctgaatggcacacatacacaatctatgtctcaattgttccaaggcttaaaaatccttatttaactgTTCTTTAACTGTGTCTTTAACTGtgccccttcatctacactgattgatgtggatttaacaggtgacgtcaataagggatcatagctttcacctggtcagactatgtcatggaaagagcaggtgtccttaatgttttgtatactcagtgtataatggCTAAACAAAGTGAGGCATGTTGGTCTTCCTGAATGAAAGACATAGTCAGTAGCTGTCAGTCATTATCCATTCAGTCATTATTCTCTGTTTGGCTTCACCCTAGTGCGCACCGTCAGCTGCTTGGTGACGACTCCAGTCTCGATGGCCGACTGGTTCATGGCCTTGAGGACCTCAAAATCAGGGGCCTCGATGAACACCACGTAAGGCAGGAACTCAGACGTCCACAGTACCTTCAA

Function

NR:

description
MAGUK p55 subfamily member 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1329578 True 2961 lncRNA 0.41 2 32853923 32858140

Neighbor

gene id symbol gene type direction distance location
si:dkey-283b1.6 NA coding upstream 8027 32843296 ~ 32845896 (+)
LOC110486141 LOC106607465 coding upstream 10824 32826492 ~ 32843099 (+)
LOC110485150 LOC105907864 coding upstream 27900 32825222 ~ 32826023 (+)
LOC118938068 NA coding upstream 29388 32820046 ~ 32824535 (+)
ifn2 ifn2 coding upstream 131247 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 coding downstream 143216 33001356 ~ 33230495 (+)
LOC110486149 LOC106600856 coding downstream 391092 33249232 ~ 33255122 (+)
LOC110486148 LOC106607470 coding downstream 412939 33271079 ~ 33284807 (+)
LOC110485152 LOC106607471 coding downstream 438618 33296758 ~ 33304976 (+)
LOC110486150 psd3 coding downstream 462495 33320635 ~ 33327034 (+)
G1165913 NA non-coding upstream 287 32853257 ~ 32853636 (+)
G1165902 NA non-coding upstream 34721 32818995 ~ 32819202 (+)
G1165899 NA non-coding upstream 39056 32814618 ~ 32814867 (+)
G1165893 NA non-coding upstream 49690 32803893 ~ 32804233 (+)
G1166077 NA non-coding downstream 47305 32905445 ~ 32905782 (+)
G1166187 NA non-coding downstream 134808 32992948 ~ 32993307 (+)
G1166188 NA non-coding downstream 135394 32993534 ~ 32993737 (+)
G1166201 NA non-coding downstream 157840 33015980 ~ 33016248 (+)
G1166202 NA non-coding downstream 158352 33016492 ~ 33016714 (+)
LOC110486134 LOC106600876 other upstream 743190 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1734246 31113781 ~ 31119681 (+)
G1162753 NA other upstream 3022627 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3359021 29494362 ~ 29494902 (+)
G1166318 NA other downstream 381813 33239953 ~ 33249208 (+)
G1166779 NA other downstream 932500 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1823048 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 3131716 35989856 ~ 35992600 (+)

Expression


Co-expression Network