G1166240


Basic Information

Item Value
gene id G1166240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33088583 ~ 33127393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1329935
gctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataactttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcacacttcatgattgtgtcccacttgttgttgtttct
>TU1329934
cagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagtgtgatcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttgttgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcacacttcatgattgtgtcccacttgttgttgtttct

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1329935 False 306 lncRNA 0.43 3 33088583 33127393
TU1329934 True 421 lncRNA 0.44 2 33126400 33127393

Neighbor

gene id symbol gene type direction distance location
si:dkey-283b1.6 NA coding upstream 242687 32843296 ~ 32845896 (+)
LOC110486141 LOC106607465 coding upstream 245484 32826492 ~ 32843099 (+)
LOC110485150 LOC105907864 coding upstream 262560 32825222 ~ 32826023 (+)
LOC118938068 NA coding upstream 264048 32820046 ~ 32824535 (+)
ifn2 ifn2 coding upstream 365907 32714937 ~ 32722676 (+)
LOC110486149 LOC106600856 coding downstream 121839 33249232 ~ 33255122 (+)
LOC110486148 LOC106607470 coding downstream 143686 33271079 ~ 33284807 (+)
LOC110485152 LOC106607471 coding downstream 169365 33296758 ~ 33304976 (+)
LOC110486150 psd3 coding downstream 193242 33320635 ~ 33327034 (+)
csf-3 csf-3 coding downstream 208054 33335447 ~ 33339727 (+)
G1166239 NA non-coding upstream 737 33087515 ~ 33087846 (+)
G1166237 NA non-coding upstream 4790 33083571 ~ 33083793 (+)
G1166235 NA non-coding upstream 7338 33080907 ~ 33081245 (+)
G1166232 NA non-coding upstream 12042 33076157 ~ 33076541 (+)
G1166231 NA non-coding upstream 13571 33074798 ~ 33075012 (+)
G1166318 NA non-coding downstream 121075 33239953 ~ 33249208 (+)
G1166354 NA non-coding downstream 180126 33307519 ~ 33307823 (+)
G1166357 NA non-coding downstream 185494 33312887 ~ 33313192 (+)
G1166364 NA non-coding downstream 191806 33319199 ~ 33319408 (+)
LOC110486134 LOC106600876 other upstream 977850 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 1968906 31113781 ~ 31119681 (+)
G1162753 NA other upstream 3257287 29830754 ~ 29831296 (+)
G1162364 NA other upstream 3593681 29494362 ~ 29494902 (+)
LOC110486146 LOC106607468 other downstream 101720 33001356 ~ 33230495 (+)
G1166779 NA other downstream 663247 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1553795 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2862463 35989856 ~ 35992600 (+)

Expression


Co-expression Network