G1166582


Basic Information

Item Value
gene id G1166582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33367644 ~ 33367905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1330346
ccttatattaagcaaaccagatggcaatttttttatttatttacggatatccaggggcacactccaacactcagatataattgATAAACAAAGcacttgtgtttagtgagtccttcagatcagaggcagtagatgaccagggatgttctcatgACAAGTGCGTAAATTGgaacattttcctgtcctgctaagcattcaaaatgtaacgggGAACtcttaggtgtcagggaaaatgtatggagtaaaaagtacagtattttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1330346 True 262 lncRNA 0.38 1 33367644 33367905

Neighbor

gene id symbol gene type direction distance location
csf-3 csf-3 coding upstream 27917 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 40610 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 65218 33296758 ~ 33304976 (+)
LOC110486148 LOC106607470 coding upstream 82837 33271079 ~ 33284807 (+)
LOC110486149 LOC106600856 coding upstream 112522 33249232 ~ 33255122 (+)
LOC110486158 LOC106607478 coding downstream 269904 33637809 ~ 33653835 (+)
LOC110486161 LOC106607482 coding downstream 402534 33770439 ~ 33783009 (+)
LOC110485153 LOC106607489 coding downstream 850940 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 897479 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 909331 34277236 ~ 34292574 (+)
G1166573 LOC106607474 non-coding upstream 1477 33348820 ~ 33366167 (+)
G1166571 NA non-coding upstream 21459 33345961 ~ 33346185 (+)
G1166369 NA non-coding upstream 34981 33332409 ~ 33332663 (+)
G1166364 NA non-coding upstream 48236 33319199 ~ 33319408 (+)
G1166357 NA non-coding upstream 54452 33312887 ~ 33313192 (+)
G1166575 LOC106607474 non-coding downstream 1331 33369236 ~ 33369958 (+)
G1166584 NA non-coding downstream 3250 33371155 ~ 33371384 (+)
G1166591 NA non-coding downstream 53395 33421300 ~ 33459483 (+)
G1166590 LOC100286406 non-coding downstream 56067 33423972 ~ 33432342 (+)
G1166690 NA non-coding downstream 175208 33543113 ~ 33545530 (+)
G1166318 NA other upstream 118436 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 137161 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 645182 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1256911 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 2247967 31113781 ~ 31119681 (+)
G1166779 NA other downstream 422735 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1313283 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2621951 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2799723 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2801991 36169896 ~ 36171571 (+)

Expression


Co-expression Network