G1167465 (hoxb9ab)


Basic Information

Item Value
gene id G1167465
gene name hoxb9ab
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34165433 ~ 34167938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331332
AGTGCTATCTCACAGATAAACAACACAGGACTGAATACAATTTACATGAGGGACACAAGAGATTAatgtgatataaaaaaaaaaaagactgagAGGGGGTTAGTAGTTTCTGGAGTCGGTCCTTACAGCGTTGTTGTTATTAAAAACTAAGAGTTCAACTGAGATGACATGAAGGCCTCTGCAATGAAAGCTGCCGTGGATATGCGAGGCTCGAGCGCATGGAGACACAATGGGGTCTAATGCTCCTTAATATTCAGAATGAAGGACAGCCATGCTCGTGACTCCAGAAACGCCACCCATTTCATATCCCACTGAAAATCCATCATAAGAGTTTCCCAGTATGTTTGTAAGtactcacacaaacaaacaaacaaaaatacatGTACACCAAATAAGTACATCATTCCTTATTGTATTGACAACACGGTTAAATCAGTTAATGCTCAATACATTCTGGACAAGAACATGTAAACAATATCTAAAACTGGAAAAACGACGTCTGCTCATTCAACTCCGATGTCATTTCCCAAAACACCAATTTTGAACATATTCAACTCATTCCAATAAAAACAATCGAGGTTATTCACCTAGGCCTATTTACAATTAATTAGAAATATTATCATCCAAAAACTGCTATAGCATGGCGCATTTTCTTCAGATAGATTTTCATTtccaaaacacacaaacataaagaaataaattACATTTCATTATGATATTAGGCATGCGCTAACAATGTAAACATTTTATTCTTAGACAATGTAGGCTTGTTTTTCTTCGACATATGTTATATCCTGTATTTAAGCGCATGGGAGTACATCTTTTTATGGCAAATATCAAAATGAGAGAGAGCGTAAAAGGGCGGGTTATTGTAGGCCCTTTTATTTCCACGTAAATGTTCAAAAGCGTCCCACTGTTAGACTGCACAGTCATTAGATCAAAGCAAGTAGGCTCAAGGCCACTGGATCTATTGACCTTATATTGGCAGACCAAACTATATAAAACTAGGATTAGGAAAAGTAGGATTAATCCCAGTCATCTTGCATGTGATCTAACATTGTTGCATATGATACTTCAACTACCATGTTGCGCTATCTACCCGAAAACACGTATTCCTGATTAATTTCTACGTCAAGTAgtctaaaatactttttttttaatagCAATTACACAACGAAATAGTAACATTGGTCTCAAGGAAATGTTAACGGATAAATACCCCGTAGAccagggttctccaaccctgttcctggaaagctactgtcctgtagtttttcactccaaccctaatctagcgtaCTTGATTCTAATATATgtctggttgataagctgaatcaggttagagtgaaaacctacaggagagaagctctccaggaacagggttggagagccctgtcaTAGACCTTTCCATATGAAACCCTTATTAGAATGTAAAATTATTATGTAGAAAAAAGAGATACATATAAGAGTGTGCATATACCTGTTGAGTTAGTATTTAAAGGGATTACAACAAATACCTGGAACCCTGATATTTTGGTAAATGCGACCTAGTCAAAAAGGCTCTGGGGGATGTGACGCCACACTAGGTTATTCATCGAGTTAAAATATAACATCATTGGGGAACTGAATTGGGGAACTGCTGCTcggaaaataaaataatgtatttttcgtGAAAGATCAGCACCATCATTACGTAAGACGCATCTATGGAGTTGAACAGAGGAATGGAGCGAAAAAAAACTAAAAGATGAGAATAAATGCAGGTTGCACACACCCTTTGACTACAACCGTTTCTCTTATGTATTAATGACCGCATGAAACCGACGTTTCAGCACCTCCATGCCTCTCCTGATGAGCGTTGGTGTCATGCGTAAAGCAATAAATAAGTGATCAAAGTAGTGCTTGAGAAAGAGCCGCGTGAATCCACCCTCCTTTCTactgtatagtataatatatgccatttagcagacgcttttatccaaagcgacttacagtcatgcgtgcatacattttatgtaCAGGTGATCCCGGGAAACAAACCATCTACCCTGGCGTCACAAGCGCCATGCTGTACCAACTGAGTCTGCGTTTCTATAATGTCAGAGGGTATTTCACATCGATAtggaaaataataaaaacaaactTCCTGCACCCCCACTTTAACCATTACAGTCCATGTATGCCTATTTAAGGGAAAAGTAACGAGAAAGCAGACTCTTTGTGATGGTGGTGTTTTTAATTGTTCTTAATCCTTGGGTTGGTCCTTATTCATTTTCTTCATTTTCATCCGTCGGTTTTGGAACCATATTTTGACTTGTCTCTCGGTCAAGTTCAGGGAGCGCGCTACCTCGTGCCTTCTGTCCCGGGTGAGGTACATGTTGAAGAGGAACTCTTTCTCGAGCTCGAGGGTTTGGTATTTCGTGTAAGGGCACCGCTTCTTCCGGGAAGACCGGGCATGCAACCAGTTGGCAGA

Function

NR:

description
homeobox protein HoxB9ab

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331332 True 2473 lncRNA 0.39 2 34165433 34167938

Neighbor

gene id symbol gene type direction distance location
LOC110486161 LOC106607482 coding upstream 382424 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 511598 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 825706 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 838399 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 863007 33296758 ~ 33304976 (+)
LOC110485153 LOC106607489 coding downstream 50907 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 97446 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 109298 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 141516 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 199359 34367297 ~ 34372229 (+)
G1167464 NA non-coding upstream 497 34164683 ~ 34164936 (+)
G1167428 NA non-coding upstream 16655 34148153 ~ 34148778 (+)
G1167420 NA non-coding upstream 32572 34132513 ~ 34132861 (+)
G1167419 NA non-coding upstream 34434 34130740 ~ 34130999 (+)
G1167418 NA non-coding upstream 35451 34129773 ~ 34129982 (+)
G1167469 LOC106607488 non-coding downstream 11597 34179535 ~ 34180105 (+)
G1167471 LOC106607488 non-coding downstream 13550 34181488 ~ 34182131 (+)
G1167506 NA non-coding downstream 55051 34222989 ~ 34223454 (+)
G1167507 NA non-coding downstream 55634 34223572 ~ 34223775 (+)
G1166779 NA other upstream 361768 33790640 ~ 33803665 (+)
G1166318 NA other upstream 916225 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 934950 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1442971 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2054700 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 513250 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1821918 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1999690 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2001958 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2170155 36338066 ~ 36339755 (+)

Expression


Co-expression Network