G1167671


Basic Information

Item Value
gene id G1167671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34502511 ~ 34505076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331557
GTGACATTTTAATTGGTACAACATGTCTGACGCAGAAGGGTGAAATGTACAGAAGGAACCAGGGCCTGGATTAAGCCAAGTATGAAATGGAGGGACGAGAAGAAGACACGAATAAGGAGGTTCTCTCAATGTGAGTGCATACTGCTCCTGTTGAAATGGCCACACAGGCCCTCTGACACAAAGAGGGAATATCTAAATAAACGACAGAAGgcaagagaaagacatatggaaATACTAACAGTTCGTCACTGGTTTCTGACAAAAGCCTGCCGTCATCTATCCCAGTTTTATTCACTATATTACAAGCTTTATACATATTAACATGTAGAATTGCTATGACTACCATTTTACCCATATGAGGTGTATACACTTAATGATTagtttagcttttttttttttttttaaacacatccTGAATTGACTTACAGCGAATGCGTATGATAAGGCAAAAGACCAGCAAAGGGTTGAAATAAAAAGAGAATAGCGAGTGACagtttagggggggggggttctgtcacaatGAGGAATAAGACTAACCCGACAAAACAAACAATAGGAACCAATCACAAGTACCAGCCTTAAAGGTTCACGCCCTTGGGTAACAATGTGCATTTGTTTCAGGCTTGTGGTCAAGTGCATTAATAAGCAAAGAAAATGTAGGGACTACATTACATAAATGTTATTCTGGAAATCAAGTagatttttcttttttctttcaaAAGACAGAATGTAGACAACTATGCCTGAGATGAACAACTTGGCTGTTAAATCACTAGTTTGTCCATTCAACCCTCAGCAGAAGAGCTCAAAATTGGTACACAGACACAGGTCTGCACTGCCCTTTCGCTCAACATTGGCCAAATCCATAATAcacaactgtttttttttttaaattacaagtTGAAGGGGTACTGCATCACAACCATGTAACTCCCACGTCTCCCTATGGGAAAAACTAAATACTGCCACCTAGTGAAATCGGCAGGATAAGGTTGTATTTGAAAGCATCCATTTACTTACCCCACAACATAAGCCCCCCCCATCAATTTTGAACAATAAACTCTTGAAGTATTTTAGTGTCAATGTAATGGTGCAGCATCCAATGCATTTGAAAAGCTGTCATTTTTAAgctttgtgtttttattttacctttatttaactaggcaagtcagttaagaattaattcttattttcaatgaaggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttggactagtaacgctctaaccactaggctgccctgccgCCCCGGCTAGGGAGCtagtggggttgtagtgttgaGTTAGTTGTGAAATGGTTTCAGCGACCCAGACTAGTGTTTAAAGGCATAATAACCTTCTGCTTTGCATTTAGGACAACTAACAAGCTCACCTTTGTGCATTTTGTCAAGACAAGACACACTGAAAAAGAAAAACAACATGCATCTATCTGGTTAGTCTTTTCCTgcacagagaggaagggagggagagattccTTGCTGCAAGATCCCATACATGTGCACGATCATTCTCAACAGGATTACTTTTTCCACAAACCAACGATTGTCACAGGTGTTGATTACTGCCAACCATCACCGAGAACATATGGAACTATTGCTTTTGTCAGTCCATCATTCCAACCAGTCATAAGAGAACCCCACGACAAGCCTTGcagcagggagacaggatgggGGATATGAGCTGTTCCCAGTTCAGTTCGGACTTAGTTGGCACTTTTGGAAAGAACCTCTTATCTTCTCCAGTTCTCAGTTCCACAAACCGTATACCTGAAAGGAACTTTCAAACAGTTGCAGTTCCCTCCATCGGCAAGGGGTGCAGTGGGTCCCCAAAAGTCACTCCCCTTTAGACACTTAGAACCAGGCTGTAGAGTCACCGCCGTTAGGACCAGGCTGTTAGGACCAGTCACTTGTTTCTTCTGACTGGTGTTCTCCCGTTTGATGGTGATGTGGGCTCTCACAGTGCATACTCTGACGTGGAGCCCGTGTGGTAAGGAGATGAATGTCTATCATAACGGTGTCCTAGTGTTCCCCATCCACACACGAGCCTGGAAACACTATGAATGGGTAAGTATGCCTTTGTGATTAAACAGGGCAAGTTCACCCACGCGGACACAGGCTGGGAATGGCATAAGTAAGCTGCCAAACTCCACCTCCAAATGGAGTGAGACTGCCATAGAAAAAAATTCCTGGGCTATTTTCAAGGGCGAGCGTGTGAGTGAATGGTTGTGGAGCTTAAGTGAAATGTTGTCAAATGAGAAGCATGTATATGTTATATGCTGTAGGTTCCATGtgagaatgttgtgtgtgtgtgtgtgtgtaacccttgTCTCCTGTACACTAGAAGTGACGGAGTCTCAGTGTTCACCTTCCCACAGGTGGTGCAGGAGGAGCTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331557 True 2459 lncRNA 0.43 3 34502511 34505076

Neighbor

gene id symbol gene type direction distance location
LOC110486183 LOC106607499 coding upstream 11417 34458108 ~ 34491094 (+)
LOC110486181 LOC106607498 coding upstream 58896 34429333 ~ 34443615 (+)
LOC110486182 LOC106607497 coding upstream 73339 34423433 ~ 34429172 (+)
LOC110486179 LOC106607495 coding upstream 130282 34367297 ~ 34372229 (+)
LOC110486178 LOC106607494 coding upstream 136222 34309454 ~ 34366289 (+)
LOC110486187 LOC106600778 coding downstream 138674 34643750 ~ 34678134 (+)
LOC110486188 LOC107665142 coding downstream 175833 34680909 ~ 34687670 (+)
LOC110485154 LOC106600810 coding downstream 265929 34771005 ~ 34775251 (+)
LOC100136181 LOC100136181 coding downstream 277702 34782778 ~ 34844267 (+)
LOC110486194 LOC106607505 coding downstream 389695 34894771 ~ 34906048 (+)
G1167695 NA non-coding upstream 688 34501600 ~ 34501823 (+)
G1167694 NA non-coding upstream 1582 34500706 ~ 34500929 (+)
G1167692 NA non-coding upstream 9705 34492445 ~ 34492806 (+)
G1167662 NA non-coding upstream 111511 34390733 ~ 34391000 (+)
G1167656 NA non-coding upstream 118201 34384014 ~ 34384310 (+)
G1167669 NA non-coding downstream 10285 34515361 ~ 34515593 (+)
G1167667 NA non-coding downstream 10683 34515759 ~ 34516558 (+)
G1167674 LOC106600820 non-coding downstream 14238 34519314 ~ 34520927 (+)
G1167670 NA non-coding downstream 17139 34522215 ~ 34526329 (+)
G1167712 NA non-coding downstream 30246 34535322 ~ 34536593 (+)
G1166779 NA other upstream 698846 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1253303 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1272028 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1780049 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2391778 32001741 ~ 32159164 (+)
G1169121 LOC106607257 other downstream 1484780 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1662552 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1664820 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1833017 36338066 ~ 36339755 (+)

Expression


Co-expression Network