G1167715 (eif1b)


Basic Information

Item Value
gene id G1167715
gene name eif1b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34641785 ~ 34644826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331607
TCagtttatttattacatttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggacgattgctgggtcaattgtgcgccaccctatgagtCTCCGGCCCTGTtgtacagcctggattcaaaccagggactgtagtgacacatcTTGCACTGCCTTCGACCACTATGCCACTCAGAAGCCCTAAAGTTTGATTTGCAGCTTTTTTAGGATGTTCTCAAACGGCACCCATAGTTATCATGTAACGAATGCCTGTACCGAGTCAGATTTTTCTGCTGACCTAGGTCAAGACACTGGCTGAACCTGTGGCATGTTTTACCTTTAACAGCTCTAATCCAGAGCCAGTCAGTGCATTCAAAGGTCAGTAGAACATCACATCTCCAAGTAAAACATCCATTAGCACTAGTATGAAAAGACGCTTCCCCACAAGACACCATGTCTCGTACAATAAGCAGGTAGTTGGATTGCCATTTTTAAACACAGCAATTGTACAAATTATCATAGGCATATCAAACTATTGTGTGGTGCCGTCATTTTGTATTGTGGTATGCCATTGCAAACACCACGTATCACAAATAATTGTACCCCATGAAACAAGACATCAATTTCAATATTTATTCAATAAAATACCACCCCCCTTTCCATTTTGAGTTGGTAGCTCAGTGTCAATCCTAACATGGTTTTAAGCAGACTTGCTCCATAATACCAGTCATCTGACAACCAGGTAGAGCAGTACCTTTTTCATTATAGTTTAAATAAAATCTAAGTAGTATTACAGCGTCAGAAAATTATGCATATTTcaactttttttttgttaaaaGGAAGCACAAACTCGCCTCAGACGGGAGACAGGGCTGCGATGGTCAGAACTTCTGCAGCACTCTTCCATAACCTTGGACAGGCAGCCCCACAATACATTGGAACCACAGTTAAGGGCTCCTCCCCCAACCCCCCCTCCAAAATCCCACACCACCACAGGATACCGCATGTGGCGGTTGATCATTTTTATTGAAACTCGTACAAAACAAAGTGTTACATGGAATTGTGCCCTTCACATGGCAAACAAAAAAGTTGAAGGAAAAAAAACTAAACCACCACTCATCCCACATCCGTCAAGCCATTTGTCCATGTTTGCACTGGACTGCTCCCGTCTGAGGGGGGAGTTAAACTGGTATTAAAGTGTCTCAATTCAGAGGTATTCATCATTAGCTTAAAGGGGCTGCAGTGATTGCAGCACATGGGGAGGGAAGTATCAGGACCGGGGGAGAGGGGGCTGCAGAAAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGGAGAAGTGACATTACACAAAATAACTTTGAACTCCAGTCACAGAACATTTGCTACCAACAGGTTTTACAAACAGGGGCTTTTCTACGAGAGCCTTCTGTAGGGGCCATGACACATGACCACTTAGTACTCACAAGTGTGGAGTATACACTGGGTGCAATAGCAGCGACAAGTCAAACCTACCTCAATCAGAAATGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCGATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTCCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGCCTGTCATTACCCTTAGTTGCATCAGCAAATGGGTCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTTCCTTTCCTTTCGGATAATAACTGGTTAGCGATCGACTGGTcaaatgtatttgtttgtttttttgttctttGAACCTCCCTTTTCACCGGGACGACGTTTTGTCTTCTGAAAGGCTCTCACAAAATGGAGCTTGTTTAGCTTGCAAAGTGGAAAACAACCCTTTATAGC
>TU1331608
TCagtttatttattacatttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggacgattgctgggtcaattgtgcgccaccctatgagtCTCCGGCCCTGTtgtacagcctggattcaaaccagggactgtagtgacacatcTTGCACTGCCTTCGACCACTATGCCACTCAGAAGCCCTAAAGTTTGATTTGCAGCTTTTTTAGGATGTTCTCAAACGGCACCCATAGTTATCATGTAACGAATGCCTGTACCGAGTCAGATTTTTCTGCTGACCTAGGTCAAGACACTGGCTGAACCTGTGGCATGTTTTACCTTTAACAGCTCTAATCCAGAGCCAGTCAGTGCATTCAAAGGTCAGTAGAACATCACATCTCCAAGTAAAACATCCATTAGCACTAGTATGAAAAGACGCTTCCCCACAAGACACCATGTCTCGTACAATAAGCAGGTAGTTGGATTGCCATTTTTAAACACAGCAATTGTACAAATTATCATAGGCATATCAAACTATTGTGTGGTGCCGTCATTTTGTATTGTGGTATGCCATTGCAAACACCACGTATCACAAATAATTGTACCCCATGAAACAAGACATCAATTTCAATATTTATTCAATAAAATACCACCCCCCTTTCCATTTTGAGTTGGTAGCTCAGTGTCAATCCTAACATGGTTTTAAGCAGACTTGCTCCATAATACCAGTCATCTGACAACCAGGTAGAGCAGTACCTTTTTCATTATAGTTTAAATAAAATCTAAGTAGTATTACAGCGTCAGAAAATTATGCATATTTcaactttttttttgttaaaaGGAAGCACAAACTCGCCTCAGACGGGAGACAGGGCTGCGATGGTCAGAACTTCTGCAGCACTCTTCCATAACCTTGGACAGGCAGCCCCACAATACATTGGAACCACAGTTAAGGGCTCCTCCCCCAACCCCCCCTCCAAAATCCCACACCACCACAGGATACCGCATGTGGCGGTTGATCATTTTTATTGAAACTCGTACAAAACAAAGTGTTACATGGAATTGTGCCCTTCACATGGCAAACAAAAAAGTTGAAGGAAAAAAAACTAAACCACCACTCATCCCACATCCGTCAAGCCATTTGTCCATGTTTGCACTGGACTGCTCCCGTCTGAGGGGGGAGTTAAACTGGTATTAAAGTGTCTCAATTCAGAGGTATTCATCATTAGCTTAAAGGGGCTGCAGTGATTGCAGCACATGGGGAGGGAAGTATCAGGACCGGGGGAGAGGGGGCTGCAGAAAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTCAATCAGAAATGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTGTTGACAAAGCAGAACTATTCAAACAGCCAGTAGAACAAAACATGGATCTTGCTTAGTGTATCAACTAGTGTTGCCATAACATACCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCGATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTCCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGCCTGTCATTACCCTTAGTTGCATCAGCAAATGGGTCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTTCCTTTCCTTTCGGATAATAACTGGTTAGCGATCGACTGGTcaaatgtatttgtttgtttttttgttctttGAACCTCCCTTTTCACCGGGACGACGTTTTGTCTTCTGAAAGGCTCTCACAAAATGGAGCTTGTTTAGCTTGCAAAGTGGAAAACAACCCTTTATAGC
>TU1331609
TCagtttatttattacatttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggacgattgctgggtcaattgtgcgccaccctatgagtCTCCGGCCCTGTtgtacagcctggattcaaaccagggactgtagtgacacatcTTGCACTGCCTTCGACCACTATGCCACTCAGAAGCCCTAAAGTTTGATTTGCAGCTTTTTTAGGATGTTCTCAAACGGCACCCATAGTTATCATGTAACGAATGCCTGTACCGAGTCAGATTTTTCTGCTGACCTAGGTCAAGACACTGGCTGAACCTGTGGCATGTTTTACCTTTAACAGCTCTAATCCAGAGCCAGTCAGTGCATTCAAAGGTCAGTAGAACATCACATCTCCAAGTAAAACATCCATTAGCACTAGTATGAAAAGACGCTTCCCCACAAGACACCATGTCTCGTACAATAAGCAGGTAGTTGGATTGCCATTTTTAAACACAGCAATTGTACAAATTATCATAGGCATATCAAACTATTGTGTGGTGCCGTCATTTTGTATTGTGGTATGCCATTGCAAACACCACGTATCACAAATAATTGTACCCCATGAAACAAGACATCAATTTCAATATTTATTCAATAAAATACCACCCCCCTTTCCATTTTGAGTTGGTAGCTCAGTGTCAATCCTAACATGGTTTTAAGCAGACTTGCTCCATAATACCAGTCATCTGACAACCAGGTAGAGCAGTACCTTTTTCATTATAGTTTAAATAAAATCTAAGTAGTATTACAGCGTCAGAAAATTATGCATATTTcaactttttttttgttaaaaGGAAGCACAAACTCGCCTCAGACGGGAGACAGGGCTGCGATGGTCAGAACTTCTGCAGCACTCTTCCATAACCTTGGACAGGCAGCCCCACAATACATTGGAACCACAGTTAAGGGCTCCTCCCCCAACCCCCCCTCCAAAATCCCACACCACCACAGGATACCGCATGTGGCGGTTGATCATTTTTATTGAAACTCGTACAAAACAAAGTGTTACATGGAATTGTGCCCTTCACATGGCAAACAAAAAAGTTGAAGGAAAAAAAACTAAACCACCACTCATCCCACATCCGTCAAGCCATTTGTCCATGTTTGCACTGGACTGCTCCCGTCTGAGGGGGGAGTTAAACTGGTATTAAAGTGTCTCAATTCAGAGGTATTCATCATTAGCTTAAAGGGGCTGCAGTGATTGCAGCACATGGGGAGGGAAGTATCAGGACCGGGGGAGAGGGGGCTGCAGAAAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGGAGAAGTGACATTACACAAAATAACTTTGAACTCCAGTCACAGAACATTTGCTACCATCACAGCGAGACTATTTACAAACAGGTTTTACAAACAGGGGCTTTTCTACGAGAGCCTTCTGTAGGGGCCATGACACATGACCACTTAGTACTCACAAGTGTGGAGTATACACTGGGTGCAATAGCAGCGACAAGTCAAACCTACCTCAATCAGAAATGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCGATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTCCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGCCTGTCATTACCCTTAGTTGCATCAGCAAATGGGTCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTTCCTTTCCTTTCGGATAATAACTGGTTAGCGATCGACTGGTcaaatgtatttgtttgtttttttgttctttGAACCTCCCTTTTCACCGGGACGACGTTTTGTCTTCTGAAAGGCTCTCACAAAATGGAGCTTGTTTAGCTTGCAAAGTGGAAAACAACCCTTTATAGC

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

NR:

description
eukaryotic translation initiation factor 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331607 False 2028 lncRNA 0.44 4 34641785 34644826
TU1331608 False 1916 lncRNA 0.44 3 34641785 34644826
TU1331609 True 2050 lncRNA 0.44 3 34641785 34644826

Neighbor

gene id symbol gene type direction distance location
LOC110486183 LOC106607499 coding upstream 150691 34458108 ~ 34491094 (+)
LOC110486181 LOC106607498 coding upstream 198170 34429333 ~ 34443615 (+)
LOC110486182 LOC106607497 coding upstream 212613 34423433 ~ 34429172 (+)
LOC110486179 LOC106607495 coding upstream 269556 34367297 ~ 34372229 (+)
LOC110486178 LOC106607494 coding upstream 275496 34309454 ~ 34366289 (+)
LOC110486188 LOC107665142 coding downstream 36083 34680909 ~ 34687670 (+)
LOC110485154 LOC106600810 coding downstream 126179 34771005 ~ 34775251 (+)
LOC100136181 LOC100136181 coding downstream 137952 34782778 ~ 34844267 (+)
LOC110486194 LOC106607505 coding downstream 249945 34894771 ~ 34906048 (+)
LOC110486195 utp18 coding downstream 274505 34919331 ~ 34932630 (+)
G1167712 NA non-coding upstream 105192 34535322 ~ 34536593 (+)
G1167670 NA non-coding upstream 115456 34522215 ~ 34526329 (+)
G1167674 LOC106600820 non-coding upstream 120858 34519314 ~ 34520927 (+)
G1167667 NA non-coding upstream 125227 34515759 ~ 34516558 (+)
G1167669 NA non-coding upstream 126192 34515361 ~ 34515593 (+)
G1167807 NA non-coding downstream 7657 34652483 ~ 34684628 (+)
G1167831 NA non-coding downstream 54150 34698976 ~ 34699211 (+)
G1167931 NA non-coding downstream 207944 34852770 ~ 34852974 (+)
G1167933 NA non-coding downstream 209869 34854695 ~ 34854931 (+)
G1167741 NA non-coding downstream 217318 34862144 ~ 34863493 (+)
G1166779 NA other upstream 838120 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1392577 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1411302 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1919323 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2531052 32001741 ~ 32159164 (+)
G1169121 LOC106607257 other downstream 1345030 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1522802 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1525070 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1693267 36338066 ~ 36339755 (+)

Expression


Co-expression Network