G1167741


Basic Information

Item Value
gene id G1167741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34862144 ~ 34863493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331645
TTTTCAGTACTCAGCATTAGGGGTTATAATATGGACAGGTTTTGTTAAGAAATGAATTATGAAAACATAGTTTATAAAAGTGTGTAGTAGGCATTACATACATGTATGAAACAAAAAAGTTAGAACTGAAAATGATTCATTATAGTTGTTCAAACCTAATCCTTTCTAATCTAACCGTAATGATGGTTGGAAGTGTCCACTTTTAACCAATTCTGGAGAAAACAATTAAAATATAGTTAGTTGTCCTGTGGTCTAGTTAGCACATTGCTCTTAAAAATCACTTCACTGTCACTTTATATTTCACTTACTAGCACCAGCGCTCCCAGTAAAAGGTGTTCACACAGACCTTTGAATAGTCAAAACGCAATTAAATAAAAGAAATACTAATAAATACAAGGGTTACGATTAAGGTGTAACAAAAACTTAAAGAGAATGAGGACTGAACGCACAAACAATTCACAAAGTCATCCCTTTTGAGTGTGAGCTTTTTGTGAAACAAAAGGAAGTCCAGTCTGACTTGAGGGGAGACGGTCACAACATCACTTCAGAAATAATTCCTTAAATCTTTGTACTGCAATCAAAAACACACATTATACAAGTTCCCCGTTTATTGTACAagggactttctttttttttttgtaaaaccaTAACAAATTGAGACAACATGGAGGAGTACTGTAACAAGTGTTCTTTGGGAGTCCTTCATACTTGACTCCATGTCAATTATACATACAGGATGAATAGTCAGGGGTAAGTGTAAGGAAAGGGGGTGGTTACAACACAGCTCCTAAACAGAGATCCTAAGACTAGCGTTTTCCATTACAAGTGTTAATATAAATAAATGCATTCTACAATGATCTGTTTTATAAAAGTCAACTGTAAATAATACAGTCAGAAGTACGATTACGATACAGGATAAAACCAAATGCCGGCATGGGCCTAACAATATACATTTTCTTtccttttttttcctttttttttttttttaaaaccacaACTTATTGTCTATACATGTTTACTAGTTAGGCGCAGTGTTTAAAATATGGGTGCCCagaaacattattattatttttttttaaatattaggAGGAATACACAAATGTGATGCCAGAAAGAAGCAACCGATAAAGAGCATTGCTGTCATCTGCAGAATAATAAGGTTTGAAGCTCATCTTCGTGCTGCAAGAAACACACAAGTTAGAAAACGATTAGAACCTCACAAGAGAGCAATACACCCTCAGGTCAGTTCTATATTACAGAAATGTGACATCTCCATCCACTGCATTAATTCACCGTTAAAACTACATTTTTACAATGCCAAAGTACATCTCCACTCTTGGTTCCAACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331645 True 1350 lncRNA 0.34 1 34862144 34863493

Neighbor

gene id symbol gene type direction distance location
LOC100136181 LOC100136181 coding upstream 17877 34782778 ~ 34844267 (+)
LOC110485154 LOC106600810 coding upstream 86893 34771005 ~ 34775251 (+)
LOC110486188 LOC107665142 coding upstream 174474 34680909 ~ 34687670 (+)
LOC110486187 LOC106600778 coding upstream 184010 34643750 ~ 34678134 (+)
LOC110486183 LOC106607499 coding upstream 371050 34458108 ~ 34491094 (+)
LOC110486194 LOC106607505 coding downstream 31278 34894771 ~ 34906048 (+)
LOC110486195 utp18 coding downstream 55838 34919331 ~ 34932630 (+)
LOC110485155 LOC106600806 coding downstream 74072 34937565 ~ 34947362 (+)
LOC110486197 LOC106607508 coding downstream 111622 34975115 ~ 34998416 (+)
LOC110486198 LOC106607509 coding downstream 139012 35002505 ~ 35023019 (+)
G1167933 NA non-coding upstream 7213 34854695 ~ 34854931 (+)
G1167931 NA non-coding upstream 9170 34852770 ~ 34852974 (+)
G1167831 NA non-coding upstream 162933 34698976 ~ 34699211 (+)
G1167807 NA non-coding upstream 177516 34652483 ~ 34684628 (+)
G1167777 NA non-coding upstream 201171 34609617 ~ 34660973 (+)
G1167934 NA non-coding downstream 8329 34871822 ~ 34872185 (+)
G1167936 NA non-coding downstream 10891 34874384 ~ 34874615 (+)
G1167958 NA non-coding downstream 69745 34933238 ~ 34933462 (+)
G1167960 LOC106584099 non-coding downstream 71179 34934672 ~ 34934886 (+)
G1167961 NA non-coding downstream 72177 34935670 ~ 34935918 (+)
G1166779 NA other upstream 1058479 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1612936 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1631661 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2139682 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1126363 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1304135 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1306403 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1474600 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1687528 36551021 ~ 36582092 (+)

Expression


Co-expression Network