G1167960 (LOC106584099)


Basic Information

Item Value
gene id G1167960
gene name LOC106584099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34934672 ~ 34934886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331874
cggacagtctgagcactgatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgctatcctgtacccgtggatgtaccgatccagtgcaggtgttgttacacgtggtctgccactgcaaggacgatcagctgtccgttctgtctccctgtagcactgtcttaggcgtctcacagtatggacattgcattttactgccctggccac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584099, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331874 True 215 lncRNA 0.54 1 34934672 34934886

Neighbor

gene id symbol gene type direction distance location
LOC110486195 utp18 coding upstream 2042 34919331 ~ 34932630 (+)
LOC110486194 LOC106607505 coding upstream 28624 34894771 ~ 34906048 (+)
LOC100136181 LOC100136181 coding upstream 90405 34782778 ~ 34844267 (+)
LOC110485154 LOC106600810 coding upstream 159421 34771005 ~ 34775251 (+)
LOC110486188 LOC107665142 coding upstream 247002 34680909 ~ 34687670 (+)
LOC110485155 LOC106600806 coding downstream 2679 34937565 ~ 34947362 (+)
LOC110486197 LOC106607508 coding downstream 40229 34975115 ~ 34998416 (+)
LOC110486198 LOC106607509 coding downstream 67619 35002505 ~ 35023019 (+)
LOC118938633 NA coding downstream 83190 35018076 ~ 35018219 (+)
LOC118938634 NA coding downstream 84059 35018945 ~ 35019088 (+)
G1167958 NA non-coding upstream 1210 34933238 ~ 34933462 (+)
G1167936 NA non-coding upstream 60057 34874384 ~ 34874615 (+)
G1167934 NA non-coding upstream 62487 34871822 ~ 34872185 (+)
G1167741 NA non-coding upstream 71179 34862144 ~ 34863493 (+)
G1167933 NA non-coding upstream 79741 34854695 ~ 34854931 (+)
G1167961 NA non-coding downstream 784 34935670 ~ 34935918 (+)
G1167969 NA non-coding downstream 15455 34950341 ~ 34951244 (+)
G1167972 NA non-coding downstream 37413 34972299 ~ 34972534 (+)
G1167984 NA non-coding downstream 64850 34999736 ~ 34999946 (+)
G1168035 NA non-coding downstream 188540 35123426 ~ 35124568 (+)
G1166779 NA other upstream 1131007 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1685464 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1704189 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2212210 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1054970 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1232742 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1235010 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1403207 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1616135 36551021 ~ 36582092 (+)

Expression


Co-expression Network