G1167969


Basic Information

Item Value
gene id G1167969
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34950341 ~ 34951244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331883
agatacctgatgccatctgcagaaaacctgtatctttcatatagatggtcatcagggaaggccagtgggtccaaccggtccctgaagaccctttctcacctgaaggctctcctcagcacaagtgcttcttcatccaccacatctcgcacgaatgggcatgccattgtcagagcagaaaggaacacacaattttgggccttcatataggctagtggccacacctggtgctggggggggggtgggcaaaagagggcgatgccttataacgatgacttggttgtactgattgctgggaaaataaaaaaaaccttagaaagatgccaccgtcctgtgtgctcacaataagagctcatgtcatggctcacttgactttacgagaatatacctaatttttattttgagctgtgtcatcttcttggagctgggggaggaaagaaaaataatgattaatacatttgtgttacagttagcatacagtgtacattgaaggcatatctcacctccctctcaagtttttttatttcaaggtccagtttcctaattgtcctcttttttatttcgaactccagtgcaagattttccatctttttcttcttgtactgaatgtctatgtctgccagttctatttggcaccagaggtggttgccatacaactttctgatagcttgtgagctctgtgaacacaatacaattagcgcagctggaatttggcaggatgtggtgtccttttattaatacgcactatgttgccaggctggttttcccactgtatagcatctgggtcctcatgccttctggaatccagagagatggtctc

Function

NR:

description
PREDICTED: putative nuclease HARBI1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331883 True 817 lncRNA 0.44 2 34950341 34951244

Neighbor

gene id symbol gene type direction distance location
LOC110485155 LOC106600806 coding upstream 2979 34937565 ~ 34947362 (+)
LOC110486195 utp18 coding upstream 17711 34919331 ~ 34932630 (+)
LOC110486194 LOC106607505 coding upstream 44293 34894771 ~ 34906048 (+)
LOC100136181 LOC100136181 coding upstream 106074 34782778 ~ 34844267 (+)
LOC110485154 LOC106600810 coding upstream 175090 34771005 ~ 34775251 (+)
LOC110486197 LOC106607508 coding downstream 23871 34975115 ~ 34998416 (+)
LOC110486198 LOC106607509 coding downstream 51261 35002505 ~ 35023019 (+)
LOC118938633 NA coding downstream 66832 35018076 ~ 35018219 (+)
LOC118938634 NA coding downstream 67701 35018945 ~ 35019088 (+)
LOC118938632 NA coding downstream 68305 35019549 ~ 35019692 (+)
G1167961 NA non-coding upstream 14423 34935670 ~ 34935918 (+)
G1167960 LOC106584099 non-coding upstream 15455 34934672 ~ 34934886 (+)
G1167958 NA non-coding upstream 16879 34933238 ~ 34933462 (+)
G1167936 NA non-coding upstream 75726 34874384 ~ 34874615 (+)
G1167934 NA non-coding upstream 78156 34871822 ~ 34872185 (+)
G1167972 NA non-coding downstream 21055 34972299 ~ 34972534 (+)
G1167984 NA non-coding downstream 48492 34999736 ~ 34999946 (+)
G1168035 NA non-coding downstream 172182 35123426 ~ 35124568 (+)
G1168013 NA non-coding downstream 173381 35124625 ~ 35125327 (+)
G1168133 NA non-coding downstream 332781 35284025 ~ 35292246 (+)
LOC110486188 LOC107665142 other upstream 262691 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1146676 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1701133 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1719858 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2227879 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 1038612 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1216384 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1218652 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1386849 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1599777 36551021 ~ 36582092 (+)

Expression


Co-expression Network