G1168539 (LOC106600802)


Basic Information

Item Value
gene id G1168539
gene name LOC106600802
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35002513 ~ 35008297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1332537
CTAGGTTCAATTTTGGAATCTTGTCTTTGTGCAATTGTTATCGAGGACACAATGTCACAAGTTCCATATTACAGTAGATAGATTGAGGTTTTAACCATGGTATCCTCATGTGAGGAAGTGTGTGTGCCAGGGGCACTCACTATGTCCTGGCAGATGTATCCAATGGCCTCCAGGGTGGACTCCTTCATGTGCTCAGTGCTGCTGGGGTCCGTCACGTTGGCCACCAGCTGGGGAATGAGCTCGGGCCACTGGGTGACGGGGATCTCTGCGCAGGCGATGCCAGCCACACACTGGGAGGCCGAGCTGGGCCGGTACGTCTCTGTGCCCAGGGTCTGCAGAACAAAGTTCTTGATCTCCCTCCGGGCGTTGGCGTCGATGGCAAGCCATCTCTGCTGGTAGCGTGTCTTCACGTCCGGGTCTTTGGAGGTGAGTGAGTTCTTCACCTGCAGCCCTGCGGCCACGCGAGCCACCTGGGTGTTGCCAGGGTTGGCGAGCACCTTGGAGAGCTCCACCAGGAACGTGGGCAAATTCTCAATTGCCGCCTGCTCCAGAAACTTCTGTGCCGCCTCCAGTTCATTTCGATCTGGAGAGACAGTTTTTTCGAGGATTGTTATCAGCTCCATTCTGTCCCAACCACTCTACACAGAAGTCGCTAGCTAGTTAGATTGCCGCGCACAACTCAACCCCGGATTATATTTCTTCAGTGTTCAACCAAAGTAACAAGACCGTGGATAAATCAACGAAAGCCGGTGAGAAAAACACACACGCCCAGTATCCCCCAGCCGATTAGTTTACTCTGGATATGGGCTATTTCCAAACGCGGAACCTGGAAAAAAATTGTTTAAGCAGCAATGCCGCTTGTTCATTCTGTGTTGTCGGGAGGGAAAGGGCCTTGCTCGACTCCCGCGGAAGGATATCACGCGCCGCTTCtatgaaaaaagaaaaa

Function

NR:

description
PREDICTED: importin subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1332537 True 946 TUCP 0.53 4 35002513 35008297
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486196 ubc12 coding downstream 35617 34955716 ~ 34966896 (-)
ndkb ndkb coding downstream 91728 34907936 ~ 34910785 (-)
si:dkey-89b17.4 LOC106607502 coding downstream 122612 34855625 ~ 34879901 (-)
LOC110486193 LOC106607504 coding downstream 266872 34720795 ~ 34735641 (-)
LOC110486190 LOC106600811 coding downstream 286731 34712159 ~ 34715782 (-)
LOC110486202 LOC106600799 coding upstream 68508 35076805 ~ 35107630 (-)
LOC110486203 LOC106607515 coding upstream 115135 35123432 ~ 35148336 (-)
LOC110486204 LOC106607517 coding upstream 161909 35170206 ~ 35182762 (-)
trnac-gca-7 NA coding upstream 474687 35482984 ~ 35483055 (-)
LOC110486206 LOC106607239 coding upstream 489252 35497549 ~ 35532036 (-)
G1168577 NA non-coding downstream 3618 34998687 ~ 34998895 (-)
G1168549 NA non-coding downstream 4116 34994954 ~ 34998397 (-)
G1168568 NA non-coding downstream 28869 34973400 ~ 34973644 (-)
G1168556 NA non-coding downstream 59003 34943302 ~ 34943510 (-)
G1168542 NA non-coding upstream 9621 35017918 ~ 35019038 (-)
G1168592 NA non-coding upstream 30393 35038690 ~ 35039455 (-)
G1168758 NA non-coding upstream 294994 35303291 ~ 35303527 (-)
G1168760 NA non-coding upstream 299617 35307914 ~ 35308135 (-)
G1168801 NA non-coding upstream 334240 35342537 ~ 35342759 (-)
G1168559 NA other downstream 52204 34949237 ~ 34950309 (-)
G1168448 NA other downstream 150852 34843280 ~ 34851661 (-)
LOC110486186 eif1b other downstream 357707 34642407 ~ 34644859 (-)
G1168629 NA other upstream 89155 35097452 ~ 35111011 (-)
G1170691 rl19 other upstream 853855 35862152 ~ 35864644 (-)
LOC110485158 LOC106607258 other upstream 990626 35995257 ~ 36000992 (-)
G1170811 NA other upstream 1082465 36090762 ~ 36091417 (-)

Expression

G1168539(LOC106600802) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

G1168539(LOC106600802) Expression in each Bioproject

Bar chart with 13 bars.
G1168539(LOC106600802) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Co-expression Network