G1168035


Basic Information

Item Value
gene id G1168035
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35123426 ~ 35124568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331954
CCTTTGTAACCTGTGGACTGCACACAGATGCACCCACTGATGTTTATTAACAACAATTTGTCTGCATGATAACATAAGGCAAAGTCACGTTGTGTGCTTGAATGTATGTATGTTCATCACACTTACATCATTCTCTGCAGTAAGACGTTTAATTTACAAAAGTTGTATATACATTTAGAAAATAGTGCACGAGACACACAtactcacaaatacacacagacatgtgAGACTTccataaacatatttttttgcgGAAGTGTATAGACATGGTAATTGGCACGTCTGAGAACAAGCTTTGTCgagagtttattttttattttttgcataATTTTCATATTCTTCAAAAAGACCAATCAAAACAGGCACATTTGCAGATGCAGGCAGCTTCAGCAGGGAAGGTACTAATAACAGAGGATGAAGgtCTACTCAGCTCCAGGCCAGActaatagactgtagagtaggtCTACTCCGCTCCAGGCCAGActaatagactgtagagtaggtCTACTCCgctccagaccagactaatacAAAATATCCCTTGACTGTATAAACCCCTGAACTAGGGATCCAGCTCCTTCAgcgcttcacacacacacacacacagctctcgtCATGAAAACACAATCAAtcctaaagtaaaaaatatagaaaaacattTGCTCTCACTGAGAATGTGTCTATGATTCCCCCCCACCCAAACAAATCACATGTAGTGTAAAGCAAATACATAATTTAGTGCAAATAGCAATAGATGAATCACTTTGGAATACTACGTTGAGTGTGAGAAACGACAATGCAGAATGACCAATCTAAAATATATCTGTAATCTCTTCAACAAGACATAGACATCCAGGTGACTAAATGTAGCAGGATACtgtagaaggaaaaaaaaaaaacatgaaaagctTGACCCTGAACAATGGGGACAACTACTGGCTACGACAAGCTATATTCAGCTCACTCTTCATTCAATAAGGCTGCGTTTAAGGCAGTCCAATTCTGACCTCCCCCCCCCCAACtagttggtcttttgaccaaccacatcagatcttttcacaccAGATATTTTTTCAAAAGAGAAAAAATATATGATTTGAGC
>TU1331955
CCTTTGTAACCTGTGGACTGCACACAGATGCACCCACTGATGTTTATTAACAACAATTTGTCTGCATGATAACATAAGGCAAAGTCACGTTGTGTGCTTGAATGTATGTATGTTCATCACACTTACATCATTCTCTGCAGTAAGACGTTTAATTTACAAAAGTTGTATATACATTTAGAAAATAGTGCACGAGACACACAtactcacaaatacacacagacatgtgAGACTTccataaacatatttttttgcgGAAGTGTATAGACATGGTAATTGGCACGTCTGAGAACAAGCTTTGTCgagagtttattttttattttttgcataATTTTCATATTCTTCAAAAAGACCAATCAAAACAGGCACATTTGCAGATGCAGGCAGCTTCAGCAGGGAAGGTACTAATAACAGAGGATGAAGGTCTACTCAGCTCCAGGCCAGActaatagactgtagagtaggtCTACTCCGCTCCAGGCCAGActaatagactgtagagtaggtCTACTCCgctccagaccagactaatacAAAATATCCCTTGACTGTATAAACCCCTGAACTAGGGATCCAGCTCCTTCAgcgcttcacacacacacacacacagctctcgtCATGAAAACACAATCAAtcctaaagtaaaaaatatagaaaaacattTGCTCTCACTGAGAATGTGTCTATGATTCCCCCCCACCCAAACAAATCACATGTAGTGTAAAGCAAATACATAATTTAGTGCAAATAGCAATAGATGAATCACTTTGGAATACTACGTTGAGTGTGAGAAACGACAATGCAGAATGACCAATCTAAAATATATCTGTAATCTCTTCAACAAGACATAGACATCCAGGTGACTAAATGTAGCAGGATACtgtagaaggaaaaaaaaaaaacatgaaaagctTGACCCTGAACAATGGGGACAACTACTGGCTACGACAAGCTATATTCAGCTCACTCTTCATTCAATAAGGCTGCGTTTAAGGCAGTCCAATTCTGACCTCCCCCCCCCCAACtagttggtcttttgaccaaccacatcagatcttttcacaccAGATATTTTTTCAAAAGAGAAAAAATATATGATTTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331954 False 1102 lncRNA 0.39 2 35123426 35124568
TU1331955 True 1102 lncRNA 0.39 2 35123426 35124568

Neighbor

gene id symbol gene type direction distance location
LOC110486200 LOC106607513 coding upstream 49493 35040535 ~ 35073933 (+)
LOC100499595 socs7 coding upstream 83957 35025113 ~ 35039469 (+)
LOC110486198 LOC106607509 coding upstream 100407 35002505 ~ 35023019 (+)
LOC118938632 NA coding upstream 103734 35019549 ~ 35019692 (+)
LOC118938634 NA coding upstream 104338 35018945 ~ 35019088 (+)
LOC110486205 LOC106607518 coding downstream 72693 35197261 ~ 35237434 (+)
LOC110486207 LOC106600795 coding downstream 363357 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 496809 35621377 ~ 35623321 (+)
trnac-gca-8 NA coding downstream 682599 35807167 ~ 35807238 (+)
trnac-gca-9 NA coding downstream 687586 35812154 ~ 35812225 (+)
G1167984 NA non-coding upstream 123480 34999736 ~ 34999946 (+)
G1167972 NA non-coding upstream 150892 34972299 ~ 34972534 (+)
G1167969 NA non-coding upstream 172182 34950341 ~ 34951244 (+)
G1167961 NA non-coding upstream 187508 34935670 ~ 34935918 (+)
G1167960 LOC106584099 non-coding upstream 188540 34934672 ~ 34934886 (+)
G1168013 NA non-coding downstream 57 35124625 ~ 35125327 (+)
G1168133 NA non-coding downstream 159457 35284025 ~ 35292246 (+)
G1168134 NA non-coding downstream 160203 35284771 ~ 35293174 (+)
G1168755 NA non-coding downstream 177024 35301592 ~ 35301815 (+)
G1168777 NA non-coding downstream 198426 35322994 ~ 35323196 (+)
LOC110486188 LOC107665142 other upstream 435776 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1319761 33790640 ~ 33803665 (+)
G1166318 NA other upstream 1874218 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 1892943 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2400964 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 865288 35989856 ~ 35992600 (+)
G1169207 NA other downstream 1043060 36167628 ~ 36168331 (+)
G1169208 NA other downstream 1045328 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1213525 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1426453 36551021 ~ 36582092 (+)

Expression


Co-expression Network