G1168134


Basic Information

Item Value
gene id G1168134
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35284771 ~ 35293174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1332061
cttggagtgtggagtcagcttggtcggaccagcgttggacagacctcagcgtgggagcctcttgttttagtttctgtctgtaggcagggatcaacaaaatggagtcgtggtcagcttttccgaaaggggggcggggcagggccttatatgcgtcgcggaagttagagtaacaatgatccaaggtctttccacccctggttgcgcaatcgatatgctgataaaatttagggagtcttgttttcagattagccttgttaaaatccccagctacaatgaatgcagcctccggataaatggtttccagtttgcaaagagttaaataaagtttgttcagagccatcgatgtgtctgcttggggggggatatatacggctgtgattataatcgaagagaattctcttggtagataatgcggtctacatttgattgtgaggaattctaaatcaggtgaacagaaggatttgagttcctgtatgtttctttcatcacaccatgtcacgttagctaTAAGGcat
>TU1332062
cttggagtgtggagtcagcttggtcggaccagcgttggacagacctcagcgtgggagcctcttgttttagtttctgtctgtaggcagggatcaacaaaatggagtcgtggtcagcttttccgaaaggggggcggggcagggccttatatgggtcgcggaagttagagtaacaatgatccaaggtctttccacccctggttgcgcaatcgatatgctgataaaatttagggagtcttgttttcagattagccttgttaaaatccccagctacaatgaatgcagcctccggataaatggtttccagtttgcaaagagttaaataaagtttgttcagagccatcgatgtgtctgcttggggggggatatatacggctgtgattataatcgaagagaattctcttggtagataatgcggtctacatttgattgtgaggaattctaaatcaggtgaacagaaggatttgagttcctgtatgtttctttcatcacaccatgtcacgttagctaTAAGGcat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1332061 False 515 lncRNA 0.45 2 35284771 35293174
TU1332062 True 515 lncRNA 0.45 2 35284771 35293174

Neighbor

gene id symbol gene type direction distance location
LOC110486205 LOC106607518 coding upstream 47337 35197261 ~ 35237434 (+)
LOC110486200 LOC106607513 coding upstream 210838 35040535 ~ 35073933 (+)
LOC100499595 socs7 coding upstream 245302 35025113 ~ 35039469 (+)
LOC118938632 NA coding upstream 265079 35019549 ~ 35019692 (+)
LOC118938634 NA coding upstream 265683 35018945 ~ 35019088 (+)
LOC110486207 LOC106600795 coding downstream 194751 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 328203 35621377 ~ 35623321 (+)
trnac-gca-8 NA coding downstream 513993 35807167 ~ 35807238 (+)
trnac-gca-9 NA coding downstream 518980 35812154 ~ 35812225 (+)
LOC110486219 rl19 coding downstream 568919 35862093 ~ 35864645 (+)
G1168013 NA non-coding upstream 159444 35124625 ~ 35125327 (+)
G1168035 NA non-coding upstream 160203 35123426 ~ 35124568 (+)
G1167984 NA non-coding upstream 284825 34999736 ~ 34999946 (+)
G1167972 NA non-coding upstream 312237 34972299 ~ 34972534 (+)
G1167969 NA non-coding upstream 333527 34950341 ~ 34951244 (+)
G1168755 NA non-coding downstream 8418 35301592 ~ 35301815 (+)
G1168777 NA non-coding downstream 29820 35322994 ~ 35323196 (+)
G1168779 NA non-coding downstream 31069 35324243 ~ 35325149 (+)
G1168791 NA non-coding downstream 38938 35332112 ~ 35332965 (+)
G1168792 NA non-coding downstream 42515 35335689 ~ 35335923 (+)
LOC110486188 LOC107665142 other upstream 597121 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1481106 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2035563 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2054288 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2562309 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 696682 35989856 ~ 35992600 (+)
G1169207 NA other downstream 874454 36167628 ~ 36168331 (+)
G1169208 NA other downstream 876722 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 1044919 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1257847 36551021 ~ 36582092 (+)

Expression


Co-expression Network