G1168816


Basic Information

Item Value
gene id G1168816
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35356762 ~ 35363514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1332891
atcatgcactcttttttcatacagaatgaatagattctctattgaattacagcaactactttttattgagtctctacatgtcacaacagcaaccctaaccaaagcattgactggtttcgcctgcagtaagtgctttttattagggtagctgttaatggccattcttcaacaagcattctgtggagctgttctaaacatagtttatctccttgcttcacattaaagttaccttaaatggaaacatatattttatgctggaagaataagtgcttctcttttgggttaacataactgtgttttaccactagactctgctctcgagtatcaagaaagtaaacataaactgctttcatgtgttgtgttctttgtttCTATGTAATCACACAAAACTTTTTcacagctgacaatgtggaagacacctcatcaagctcaagcacctcagtcataagctgcctactcacattagcatgaagacaaatagttattagggtagctgttaatggccattcttcaacaagcattctgtggagctgttctaaacatagtttatctccttgcttcacattaaagttaccttaaatggaagcatatattttatgctggaagaataagtgcttctctttagggttaacataactgtgttttaccactagactctgctctcgagtatcaagaaagcaaacataaactgctttcatgtgttgtgttctttgtctctatgtaatcacacacaactttttcacatcaacgatcagctgacaatgtggaagacacctcatcaagctcaagcacctcagtcataagctgcctactcacattagcatgaagacaaatagttatttcacaataggtgtggaaggggcttggccgtgaactgcacagctatcagttagtgtccctgaatatttaaaatgagcacatcccagggtagaaactcactttaatgagactccttggaggactaccacctacacgaataggctccagacaagatggaaatcatggagttagcaggaagtcgtctttaactgagctctacgactgtggccttttctctaccaaaacagtaagtagtccttaccagagatctccaactctggccttttccctaccgaacctgtcacaattggtaccctaacaatagcattgacttgtctatataatgcagtaagtgctacttgttggtgtagtttgacgtgacttatgcaacaaaaaatcaccggatagtcagtgttatcctcttttgccaatagaaagattaattcaaagaaaagcgttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1332891 True 1281 lncRNA 0.39 3 35356762 35363514

Neighbor

gene id symbol gene type direction distance location
LOC110486205 LOC106607518 coding upstream 119328 35197261 ~ 35237434 (+)
LOC110486200 LOC106607513 coding upstream 282829 35040535 ~ 35073933 (+)
LOC100499595 socs7 coding upstream 317293 35025113 ~ 35039469 (+)
LOC118938632 NA coding upstream 337070 35019549 ~ 35019692 (+)
LOC118938634 NA coding upstream 337674 35018945 ~ 35019088 (+)
LOC110486207 LOC106600795 coding downstream 124411 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 257863 35621377 ~ 35623321 (+)
trnac-gca-8 NA coding downstream 443653 35807167 ~ 35807238 (+)
trnac-gca-9 NA coding downstream 448640 35812154 ~ 35812225 (+)
LOC110486219 rl19 coding downstream 498579 35862093 ~ 35864645 (+)
G1168813 NA non-coding upstream 889 35351629 ~ 35355873 (+)
G1168792 NA non-coding upstream 20839 35335689 ~ 35335923 (+)
G1168791 NA non-coding upstream 23797 35332112 ~ 35332965 (+)
G1168779 NA non-coding upstream 31613 35324243 ~ 35325149 (+)
G1168777 NA non-coding upstream 33566 35322994 ~ 35323196 (+)
G1168817 NA non-coding downstream 2002 35365516 ~ 35404023 (+)
G1168864 LOC106607239 non-coding downstream 148565 35512079 ~ 35512600 (+)
G1168865 LOC106607239 non-coding downstream 149550 35513064 ~ 35513298 (+)
G1168866 NA non-coding downstream 151053 35514567 ~ 35514824 (+)
G1168867 NA non-coding downstream 151384 35514898 ~ 35515110 (+)
LOC110486188 LOC107665142 other upstream 669112 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1553097 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2107554 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2126279 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2634300 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 626342 35989856 ~ 35992600 (+)
G1169207 NA other downstream 804114 36167628 ~ 36168331 (+)
G1169208 NA other downstream 806382 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 974579 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1187507 36551021 ~ 36582092 (+)

Expression


Co-expression Network