G1168817


Basic Information

Item Value
gene id G1168817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35365516 ~ 35404023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1332895
tctctattgaattacagcaactactttttattgagtctctacatgtcacaacagcaaccctaaccaaagcattgactggtttcgcctgcagtaagtgctttttattagggtagctgttaatggccattcttcaacaagcattctgtggagctgttctaaacatagtttatctccttgcttcacattaaagttaccttaaatggaagcatatattttatgctggaagaataagtgcttctcttttgggttaacataactgtgttttaccactagactctgctctcgagtatcaagaaagcaaacataaactgctttcatgtgttgtgttctttgtttctatgtaatcacacacaactttttcacagctgacaatgtggaagacacctcatcaagctcaagcacctcagtcataagctgcctactcacattagcatgaagacatagttatttcacaataggtgtggaaggggcttggccgtgaactgcacagctatcagttagtgtccctgaatatttaaaatgagcacatcccagggtagaaactcactttaatgagactccttggaggactaccacctacacgaataggctccagacaagatggaaatcatggagttagtaGGAAGTCGTCTTTAACTGAGCTCTACGACTgtggccttttctctaccaaaacagtatgtagtccttaccagagatctccaactctggccttttccctaccgaacctgtcacaattggtaccctaacaatagcattgacttgtctatataatgcagtaagtgctacttgttggtgtagtttgacgtgacttatgcaacaaaaaaatcaccggatagtcagtgttatcctcttttgccaatagaaagattaattcaaagaaaagcgttatttgaggccatagctcataagtgcttctctttggggtagtcttaactctgttagttataggtcatttccatagctctcagctttccagaacatgctgaattctacttcaacttgagcacccttcttttatcaagccaaagaaagtgctattaagttgatgtctgattctgcattgaattacagcaaccactttttaacgagtctctacatctacctacatgtcacaacagaaaccccaacaaaagcattgactggtttggtctgcagtaagtgctttttattggggtatttgttcatggccatttgaaaacaagcattctgtggtgcttttctgaacatggtttttctcccagtttcacattaaagttaccttaaatggaagcatacatttttttgctggaagaataagtgcttctctttggggtagccataactgtgttttgccactaggctctgctcttgagtaccaagaaagactacataaacttattttatgtgttatgtgctgtttctagctaatcatgcactcttttttcatacagaatgaatagattctctattgaattacagcacctactttttattgagtctctacatgtcacaacagcaaccctaaccaaagcattgactggtttcgcctgcagtaagtgctttttattagggtagctgttaatggcc
>TU1332896
tctctattgaattacagcaactactttttattgagtctctacatgtcacaacagcaaccctaaccaaagcattgactggtttcgcctgcagtaagtgctttttattagggtagctgttaatggccattcttcaacaagcattctgtggagctgttctaaacatagtttatctccttgcttcacattaaagttaccttaaatggaagcatatattttatgctggaagaataagtgcttctcttttgggttaacataactgtgttttaccactagactctgctctcgagtatcaagaaagcaaacataaactgctttcatgtgttgtgttctttgtttctatgtaatcacacacaactttttcacagctgacaatgtggaagacacctcatcaagctcaagcacctcagtcataagctgcctactcacattagcatgaagacatagttatttcacaataggtgtggaaggggcttggccgtgaactgcacagctatcagttagtgcccctgaatatttaaaatgagcacatcccagggtagaaactcactttaatgagactccttggaggactaccacctacacgaataggctccagacaagatggaaatcatggagttagtaGGAAGTCGTCTTTAACTGAGCTCTACGACTgtggccttttctctaccaaaacagtatgtagtccttaccagagatctccaactctggccttttccctaccgaacctgtcacaattggtaccctaacaatagcattgacttgtctatataatgcagtaagtgctacttgttggtgtagtttgacgtgacttatgcaacaaaaaaatcaccggatagtcagtgttatcctcttttgccaatagaaagattaattcaaagaaaagcgttatttgaggccatagctcataagtgcttctctttggggtagtcttaactctgttagttataggtcatttccatagctctcagctttccagaacatgctgaattctacttcaacttgagcacccttcttttatcaagccaaagaaagtgctattaagttgatgtctgattctgcattgaattacagcaaccactttttaacgagtctctacatctacctacatgtcacaacagaaaccccaacaaaagcattgactggtttggtctgcagtaagtgctttttattggggtatttgttcatggccatttgaaaacaagcattctgtggtgcttttctgaacatggtttttctcccagtttcacattaaagttaccttaaatggaagcatacatttttttgctggaagaataagtgcttctctttggggtagccataactgtgttttgccactaggctctgctcttgagtaccaagaaagactacataaacttattttatgtgttatgtgctgtttctagctaatcatgcactctttttttcatacagaatgaatagattctctattgaattacagcacctactttttattgagtctctacatgtcacaacagcaaccctaaccaaagcattgactggtttcgcctgcagtaagtgctttttattagggtagctgttaatggccattcttcaacaagcattctgtggagctgttctaaacatagtttatctccttgcttcacattaaagttaccttaaatggaagcatatattttatgctggaagaataagtgcttctctttagggttaacataactgtgttttaccactagactctgctctcgagtatcaagaaagcaaacataaactgctttcatgtgttgtgtgtgattacatagagacaaagaacacaactttttcacatcaacgatcagctgacaatgtggaagacgcctcatcaagctcaagcacctcagtcataagctgcctactcacattagcatgaagacaaatagttatttcacaataggtgtggaaggggcttggccgtgaactgcacagctatcagttagtgtccctgaatatttaaaatgagcacatcCCAGGGTAGAAGCTCACTTTAATGAGACTCCTTGGAGGACTACCACCTGCATGAataggctccagacaagatggaaatcatggagttagcaggaagtcgtctttaccagatctctacgactgtggccttttctctaccaaaacagtaagtagtccttaccagagatctccaactctggccttttccctaccgaacctgtcacaattggtaccctaacaatagcattgacttgtctatataatgcagtaagtgctacttgttggtgtagtttgacgtgacttatgcaacaaaaaatcaccggatagtcagtgttatcctcttttgccaatagaaagattaattcaaagaaaagcgttatttgaggccatagctcataagtgcttctctttggggtagtcttaactctgttagttataggtcatttccatagctctcagctttccagaacatgctgaattctacttcaacttgagcacccttcttttatcaagccaaagaaagtgctattaagttgatgtctgattctgcattgaattacagcaaccactttttaacgagtctctacatctacctacatgtcacaacagaaaccccaacaaaagcattgactggtttgttctgcagtaagtgctttttattggggtatttgttcatggccatttgaaaacaagcattctgtggtgcttttctgaacatgttttttctcccagtttcacattaaagttaccttaaatggaagcatacattttttgctggaagaataagtgcttctctttggggtagccataactgtgttttgccactaggctctgctcttgagtaccaagaaagactacataaacttattttatgtgttatgtgctgtttctagctaatcatgcactcttttttagtcagtgttatcctcttttgccaatagaaagactaattcaaagaaaagcattatttgaggccatagctcataagtgcttctctttggggtagtcttaactctgttagttataggtcatttccatagctctcagctttccagaacatgctgaattctacttcaacttgagcacccttctttcatcaagccacagaaagtgctattaagttgatgtctgattctgcattgaattacagcaaccactttttaacgagtctctacatctacctacatgtcacaacagaaaccccaacaaaagcattgactggtttggtctgcagtaagtgctttttattggggtatttgttcatggccatttgaaaacaagcattctgtggtgcttttctgaacatggtttttctcccagtttcacattaaagttaccttaaatggaagcatacattttttttgctggaagaataagtgcttctctttggggtagccataactgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1332895 False 1566 lncRNA 0.39 2 35365516 35369974
TU1332896 True 3370 lncRNA 0.39 2 35365516 35404023

Neighbor

gene id symbol gene type direction distance location
LOC110486205 LOC106607518 coding upstream 128082 35197261 ~ 35237434 (+)
LOC110486200 LOC106607513 coding upstream 291583 35040535 ~ 35073933 (+)
LOC100499595 socs7 coding upstream 326047 35025113 ~ 35039469 (+)
LOC118938632 NA coding upstream 345824 35019549 ~ 35019692 (+)
LOC118938634 NA coding upstream 346428 35018945 ~ 35019088 (+)
LOC110486207 LOC106600795 coding downstream 83902 35487925 ~ 35497727 (+)
LOC110486213 hexim coding downstream 217354 35621377 ~ 35623321 (+)
trnac-gca-8 NA coding downstream 403144 35807167 ~ 35807238 (+)
trnac-gca-9 NA coding downstream 408131 35812154 ~ 35812225 (+)
LOC110486219 rl19 coding downstream 458070 35862093 ~ 35864645 (+)
G1168816 NA non-coding upstream 2002 35356762 ~ 35363514 (+)
G1168813 NA non-coding upstream 9643 35351629 ~ 35355873 (+)
G1168792 NA non-coding upstream 29593 35335689 ~ 35335923 (+)
G1168791 NA non-coding upstream 32551 35332112 ~ 35332965 (+)
G1168779 NA non-coding upstream 40367 35324243 ~ 35325149 (+)
G1168864 LOC106607239 non-coding downstream 108056 35512079 ~ 35512600 (+)
G1168865 LOC106607239 non-coding downstream 109041 35513064 ~ 35513298 (+)
G1168866 NA non-coding downstream 110544 35514567 ~ 35514824 (+)
G1168867 NA non-coding downstream 110875 35514898 ~ 35515110 (+)
G1168872 NA non-coding downstream 113431 35517454 ~ 35517752 (+)
LOC110486188 LOC107665142 other upstream 677866 34680909 ~ 34687670 (+)
G1166779 NA other upstream 1561851 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2116308 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2135033 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 2643054 32714937 ~ 32722676 (+)
G1169121 LOC106607257 other downstream 585833 35989856 ~ 35992600 (+)
G1169207 NA other downstream 763605 36167628 ~ 36168331 (+)
G1169208 NA other downstream 765873 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 934070 36338066 ~ 36339755 (+)
LOC110486241 LOC106607273 other downstream 1146998 36551021 ~ 36582092 (+)

Expression


Co-expression Network