G1169137


Basic Information

Item Value
gene id G1169137
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36007326 ~ 36010330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1333297
CCAACATTACAACTTCTCCTCAATCTccaaaaacaaacatacaaaacaaccccccacccccaccaaaaAAACAACCCAGGACAGTATAAAGCTGCACAATTTTGTACCAGATACTCACAATAATAAAATATGCAATGCTACATTAAGTGGTTAAAAATACTTGAGGGGAAAAAgtatattgattttttttttctttttacatCTTTAAAGAATATACATTGTTATTTTTCTTAACTAGCCAGGATTTTAGTCAAAAGTGCATTCTATATAACAAATATGAAAGGAGGAGAATCATACAGTAAATCGGAAGAGAAAATGTTACACAACAAAGAGGAACCTCTGGATGAGGCAGACAAACACCTCAATGTATTTCAGATCAGATGAAGCAGGGAGGGGCTAGTGTAAAAATCGCCAAAGCAGGAGGAACAACACTACTCGATCACTCTTTGGGAGTCCATATTAGAGCCAGTCTATTGACTTAcaggaataaaaaataaaaaaatatatgaactAAACAAAACATTTCCTTATGCCATGGTCCCTTCCACGCTATCCACCTCCAGATTGATTCTCCTCCTTTTCCTTACTCAAACAGCCCCTCACCAAACCAACCGCCTCCCTCCTCCATGAACCAACACATCACTTCACTCACACAATGCATTGTCAGTCCCTCCCTTCACTGCGACTCGCTCACGCAGCAGTAAAGTGCAGAGGATACACACAAATAGAAAAGCTTTTTAAAACGaacgttaaaaaaaaagaaagaaaaaaagccTCATACTGAAACGCCATGAAAAACAGTAAGTAACTCATGGTTAAGCTGATTCTGAGGCCCAACTAACAGACCCACAGTAATGGCAGAATGGTTGTAGCTCTCTAGAGGGTGGGCATCTGTTAAACCAAATCCAATGGGCCAAATACCCGCAACTCAAGATGGTACAGGGACTTGCTAATGGATGCTACTGTTCCTCTTCAGTTTCTCCCAATATACAAACAGTAACCTGATCCAGTACTCAGCCTGAACCACCACTATGCTATACCCATTATGTGTTaatccacagaaacatgtcagacATATTCTTGTGTGTGTACAAAATCAACCTCCTACAACCCACTACCAACAATCTGACAAGACAGAATCTCTCTCGGTCATTCATCAATACGAACAACAACCGGACTGTCAGAATATCATACAATGGGACAGCGGGAACATTCACACAATAAAAAGGTTACATATGCAAACGTGATTTCTTTGAGTAAATGTACAACTTGAGTAAATGTATCTAACACCAGAAATTGAAACGCATGTTAGACATAATCCCCCAACCGATCACTCAACAGGATGTTCCGAGCGAGATGAGAACAATTCTTCAGTCTGAAACTGAATGTAGCATATTTCCagaaaatattactagaaaataacACATTTGATTGCTAAACCGTTAGCCCGTATCACTACATCTAGGCAACATTCAACATGTTTTGATTCATCATTATTTGCCAACGTGTGAGATAGGGCCTCAATGTTTGCGTAACCTTATACTGTATATGTCAGTCAAGAAGACAAATCCCAGAACTGCATCACAACAACACAACCAATCCCACACACTGTTACATTACACTCCAGATGTTACGAGATCTAGCCTGCGTATAAGAAATATGTCTAGTACTGCAATGAAAGCACCAATTAACCAGAATCTCTGTTGCAACAGACTAGTAGTAGCACTAACAGGCGTTTTCTAACCTCCCCACTGTAACCTGTGGCAGTGATTCCTGGCCTACTGCTGGTAGAGCCAGTGTGGAATTCCTTagggagagacagtgggagaccCAGTCGGCACCAGGATGGTAAACATTCAACAAGACCTTGGTGACCCCATGATCCTACGGGTCAGCCTTAGGACCAGGACTTACAACTCCCCCGAATTGTGCAACCGTTGTTAAAGTCAGTCGACGCGAAGGACTAAGTTGATGAAATGGATCTGTTCTGACCCGCTACCTGGATAAGGAACCACTAGTAGAATAATGACATTAGCAGCTGTCAGTGGAGAGGATAAAATGGACACAAACAAGGGATAACTCACAtaccggtacacacacacagccttctaccATGGGAGGCAGGTTGTCTAAGAACACAGGATTTTCGAAGAATATTTTCACAAGAAAAGATATGAGCAGAGGTTGTAAAAATCTGTGTCAGTTGACTTGGGTCTCTAGCTAAGTGGGTCACTCACTTATCTAAAGTGTAGACTGAAAGTGTACCTGTCTGTTTCCCTCAcgctctcccacacacactggtGTGTACTGAGCTGTGAGTGTCATGTTCATATCAGTATTCGAGCGGCCGTTCTACACCAGGGGCCAGGGAGAGTTGGAGTGGGGGTAATTGAGGTGTGGCAGGCAGGCCTGGAGCCCAGGGCCCACATAGGGTTCAGTGATGCTGGGGGGCCCCAGGCCCTTTGTCTTGCGGTGCCATGTAACGCAGGTAGCTGCTGTCCTCCTGCCCACAGTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1333297 True 2516 lncRNA 0.43 2 36007326 36010330

Neighbor

gene id symbol gene type direction distance location
st8sia6 LOC106607255 coding upstream 98083 35900832 ~ 35909243 (+)
LOC110486219 rl19 coding upstream 142681 35862093 ~ 35864645 (+)
LOC118938606 NA coding upstream 143322 35863923 ~ 35864004 (+)
LOC118938605 NA coding upstream 144342 35862905 ~ 35862984 (+)
trnac-gca-9 NA coding upstream 195101 35812154 ~ 35812225 (+)
LOC110486225 LOC106607261 coding downstream 31441 36041771 ~ 36052964 (+)
LOC110486228 LOC106607263 coding downstream 121238 36131568 ~ 36167388 (+)
LOC110486232 rprml coding downstream 327736 36338066 ~ 36339755 (+)
LOC110486233 LOC106607267 coding downstream 353225 36363555 ~ 36368288 (+)
LOC118938276 LOC106607270 coding downstream 447024 36457354 ~ 36460939 (+)
G1169133 NA non-coding upstream 4298 36002766 ~ 36003028 (+)
G1169116 NA non-coding upstream 30264 35976842 ~ 35977062 (+)
G1169115 NA non-coding upstream 30692 35976072 ~ 35976634 (+)
G1169103 NA non-coding upstream 49642 35957470 ~ 35957684 (+)
G1169091 NA non-coding upstream 70752 35936338 ~ 35936574 (+)
G1169138 NA non-coding downstream 1522 36011852 ~ 36012768 (+)
G1169139 NA non-coding downstream 2531 36012861 ~ 36013076 (+)
G1169145 NA non-coding downstream 8655 36018985 ~ 36019194 (+)
G1169150 NA non-coding downstream 12574 36022904 ~ 36023267 (+)
G1169149 LOC106607259 non-coding downstream 13368 36023698 ~ 36025193 (+)
G1169121 LOC106607257 other upstream 14726 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1319676 34680909 ~ 34687670 (+)
G1166779 NA other upstream 2203661 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2758118 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2776843 33001356 ~ 33230495 (+)
G1169207 NA other downstream 157298 36167628 ~ 36168331 (+)
G1169208 NA other downstream 159566 36169896 ~ 36171571 (+)
LOC110486241 LOC106607273 other downstream 540691 36551021 ~ 36582092 (+)
G1169532 LOC106607276 other downstream 660029 36670359 ~ 36671403 (+)

Expression


Co-expression Network