G1169138


Basic Information

Item Value
gene id G1169138
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36011852 ~ 36012768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1333298
GTAAATGGGATGGCTTTGGTCAGGGAGCATTTCCAAATGTTGAAGACTGAAGAGGTCTGGCTTCTAACATTATTGGAAGACTAGTGTCAATGTTTGGCATCAAAACATTTTGATGACAGGAAAAAGTTCAAAAGGCTTTTATAGGAATAGGTCCTTGAGGGTGTGCTTTGTAATTGCACGTTTGTGTCAAACAAATTCctcagtgagtgtgtgagtgtaaacagctgtgtgtgttctctgtctcaCCGGTGTGTGTTTTCATGTGCTCGTCAAAGTACTGCTTCATGTTGAAGTCCTTGCCACACCACTGACACATGAACTGCTTGTGTCCGATGTGGATGCTCATGTGGGAGCGTAGCTGGTACTTATACTGGAACCTCTCGGCACAGTTctatagggaggagagagagagagagagagagagagagagagagagagagagagagacatttagggtgtcccaaacagcaccctattcccttgtaagtgcactgctttttgaccaggacccataggggatagtagtgcactatatatggaaatagggtgccgtttgagacGTAGCCATTTAGACTACATAGCACATACACAATCATGCCTGGAATGGAAATTCATAAGGGCTACTATATAATAatatacacataaacaaacataatatataCCTAACACAGATGCAGTGGAAGAAGGAGCCCACTACGCAGTACTGGGTCTGCAGTGCTCTTTAATAACAATGTAATGACACGTTAGTGGAGTTGCTTTATTTAACCACATGGAGCCCCCACAGCCCCACCAAGCCAACCAACCACACGTTCCCAGACAACCCTCCTCCCTTTGTGGTTGGCCACACAGAGGCCCACCCAGGTTGAGGTGGTACCTGCTTCCTACAGAATGTCCTATAAACCAGAATGCTGGGTTTG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1333298 True 917 lncRNA 0.45 1 36011852 36012768

Neighbor

gene id symbol gene type direction distance location
st8sia6 LOC106607255 coding upstream 102609 35900832 ~ 35909243 (+)
LOC110486219 rl19 coding upstream 147207 35862093 ~ 35864645 (+)
LOC118938606 NA coding upstream 147848 35863923 ~ 35864004 (+)
LOC118938605 NA coding upstream 148868 35862905 ~ 35862984 (+)
trnac-gca-9 NA coding upstream 199627 35812154 ~ 35812225 (+)
LOC110486225 LOC106607261 coding downstream 29003 36041771 ~ 36052964 (+)
LOC110486228 LOC106607263 coding downstream 118800 36131568 ~ 36167388 (+)
LOC110486232 rprml coding downstream 325298 36338066 ~ 36339755 (+)
LOC110486233 LOC106607267 coding downstream 350787 36363555 ~ 36368288 (+)
LOC118938276 LOC106607270 coding downstream 444586 36457354 ~ 36460939 (+)
G1169137 NA non-coding upstream 1522 36007326 ~ 36010330 (+)
G1169133 NA non-coding upstream 8824 36002766 ~ 36003028 (+)
G1169116 NA non-coding upstream 34790 35976842 ~ 35977062 (+)
G1169115 NA non-coding upstream 35218 35976072 ~ 35976634 (+)
G1169103 NA non-coding upstream 54168 35957470 ~ 35957684 (+)
G1169139 NA non-coding downstream 93 36012861 ~ 36013076 (+)
G1169145 NA non-coding downstream 6217 36018985 ~ 36019194 (+)
G1169150 NA non-coding downstream 10136 36022904 ~ 36023267 (+)
G1169149 LOC106607259 non-coding downstream 10930 36023698 ~ 36025193 (+)
G1169151 NA non-coding downstream 15505 36028273 ~ 36028511 (+)
G1169121 LOC106607257 other upstream 19252 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1324202 34680909 ~ 34687670 (+)
G1166779 NA other upstream 2208187 33790640 ~ 33803665 (+)
G1166318 NA other upstream 2762644 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 2781369 33001356 ~ 33230495 (+)
G1169207 NA other downstream 154860 36167628 ~ 36168331 (+)
G1169208 NA other downstream 157128 36169896 ~ 36171571 (+)
LOC110486241 LOC106607273 other downstream 538253 36551021 ~ 36582092 (+)
G1169532 LOC106607276 other downstream 657591 36670359 ~ 36671403 (+)

Expression


Co-expression Network