G1169366 (LOC106607269)


Basic Information

Item Value
gene id G1169366
gene name LOC106607269
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36373566 ~ 36425661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1333545
acccaacacaTGAAAACAGATAGTGGAGAGTGGGATAAGTTGAGCCAAACGGGTTAGTTGTATCTAGGAAGCCATACACAAAATTAATAATTTGacaaaatatttaggaagaggtcataatttcatggagtctgtgaaaaattgttctatacatcattttgggtctctataagcttcaatatgcGGTCCTAAACCTaacatgaaagtgcatccttgtagctgtgtgggctgatttagtcaaaatgtttgccttggggtaagttgagccaacgGCAGTGGGGTAAATGGTTGAGCCAATGACAAGTGTTAAAAGATGCTTCAAATTATTACAAGACAAAAAAGTGATTGTGGtggtgttgaattgtgtttgggaaacagttagtggtaatatttcattcagtactGACATTTGTAGACGGCTTAACTTACCCGGCCCCCGGCTCAAATAAATTGTGTCAAGAGACCCCTTTTTTTGGACAAACTATGCTTTCAAAATTacaatgtttacatgaattcggtttatttccagggatacacaacatcctgaaatacatGTAGacatctttgttagaaagaatactatatttcccttgacagagtgatgctgaatgtaagaaatggctcaacttaccccactttCCTCTACAACAGTAGAGACTCACATCATTCTGTATGATCTGTTCACTAACTCTACCAGATACATCAGATGCTGTACATCAGATGTCAACATTAACACACAGCTAGGTGGGCAGATCAGCTCAAACACTGTCAAATGACACATTGTTTGAAATATATACGATAAGTCTTGATCATACAAGTAGTCAGTCTATATCAATGACTTGAGTCCTGACCCGGGACCATCCAGACATGTCAGCACACACAaacctcccactgggcacacactggttgaatcaacgttgtttccacatcatttcaatgaaatgacattgaaccaacgtggaatagatgttgaattgacgtctgtgcccaagtGGCTCCTTTGTCTGGGTTCCCAGTGTGGGATCATGTTGTACCGTTCTGTCCTCTCACCCAGGATTAGAGTGTGTCAAGGACTTCTGAAGGTCTGGAGGCTCACCAGCTCTCCATTCTTATGAAAGAAGAGGGATGGATGCCAAGGTATGTTGAGCCCACCCCTCCCTCCGTGCCCACTTTCTTGTTCCGCTCTACAGTTCCAattctcttctgctctctcccactctgtcccTTTTGAAGCATCTTTGATATCTTCATATGTCCCTTCCCTCACCTCCCTCATCTGTGCATCATTCCACATGAATATATCAAAAAATACATCCTCATTAGCACATTGGTTGAGCATATTAAATGTCCTGCTGTCTCAATACTGTGAGGTGTCATTGCCATAATATGACAATGCGGTCAGAATGTACCACTGCACACAATGCAGTCAGAATGCCATACTATGCTGTGTGGCTTATCCAGAGCTGGCTTTAGCCAGGCAGGGGGGCAGGGGCAGTTCATTCAGTGTGTAGACGTGACAAGGACAGTCTGGTATTTTCCAGTCAACAGGGAGATTAGTTGATGGCACAGCTGAAACACACCTTTCTGTCAATCAAAAGATGCCATCAGCTCTCTAAGCAAATAATACCTTGTATAACAAACAGTATGACATTGGACATGTCCCTAGTATACATGTAATACTTAATTAAACAGGAAAGGTATACACTGTGTGACGGCACTACTAGGGAATAGGGATGGAATAAATGTCACTAGGAATAAATCTATACACATCCCTCCATGCTGTTATCTGATGGACTGAGCCCCAAAGTTAACCTTTCACTCTAACGTCCattgttcctctcctcttccttcacccTCTCTGGGCCTCCTGTGACACGGAGCGGCCCAGTGCTTTGGGCGCCTTGGCGAACTCCATCCTGAGTGGCTTGGCGGGAGGCAGGTCCTGTGTGATCTCAACCACGGCCCTCTTGCCAGGGCAGACACCGTCGGGGATGGGGAAGGGACGGAGGTCCTTCTGGGTGTGTGGTGCTCCGCGACCCAGCCGGATGCCCAGCTGTGCAGGGGTGAAGATGGGCAGCGGCAGGGTGTTCCTCTTGGGCAGAAGCTGGTGCTCTCTCACACCCCTCTCCACGGTGCCCACTCTGTACACCCCCGAGGGACAGGCCTGGGCCAGAGAGCGAGCCTCCCACTGACGAGTGTAGGTCTCCCTACGAGAGTCATCGTTCATGTTCATTGTCTGCCTGTGGAGAGATGAGACCCTCACAGTTAGGAATGAACAGTTGGATATTGCTCAGTGATTTTCAAACTCCAATCTCTTACAGTATCAAGCAGAGAGTCCTACCAGCGAAATGAAAATCATTACATTTTACAGTCAGCTGATAGATTAGCCTGACAGTTATTATAACTAAGATACATTATACAGTAGGCTAGTCTTGAGTATGATGACTcacagggtaatataggagaacGTCGTGCTTTATTGTTATTGGATATTTTATATAAGAAGAAATTACTTAATGTTGTTCAATATGTTCTATGTACCAGAAGTAATTAATACAGTTTGTCAAAAGGCTGTGTCTCACCTGTCCATGGCTCGGGTCTTCATGTTAACGCTGTTCCAGTCGGCTTTGTAGCTCTCCCTCTGAGCCTGGTTCTCTTCATGTACGCTGCAGGCCAGCTCAGCCCCCACCACGGCCCCAGCACGCTTCTCAACAACGGTACACACCTGCATTATCACAGTTCTGTCCTTATATCTGTTTTTATCACCTCCGTTAGCTTCTAGGACTCTAGAagctctctatctatctgtctgtcttggTGTCTCTGTGTTGGGTGTTCTTCTCTCTGgattatctgtctgtctgtagttgcTAGCCAAGGTAATCTGTGATGGTTCAggcagctctctcctctctcttgcctctgtggtggtggtgatggtctGGTGagaggagagag

Function

NR:

description
telethonin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1333545 True 2958 lncRNA 0.45 2 36373566 36425661

Neighbor

gene id symbol gene type direction distance location
LOC110486233 LOC106607267 coding upstream 5278 36363555 ~ 36368288 (+)
LOC110486232 rprml coding upstream 33811 36338066 ~ 36339755 (+)
LOC110486228 LOC106607263 coding upstream 206178 36131568 ~ 36167388 (+)
LOC110486225 LOC106607261 coding upstream 325758 36041771 ~ 36052964 (+)
st8sia6 LOC106607255 coding upstream 464323 35900832 ~ 35909243 (+)
LOC118938276 LOC106607270 coding downstream 31693 36457354 ~ 36460939 (+)
LOC110486240 LOC106601006 coding downstream 99978 36525639 ~ 36547943 (+)
LOC110486241 LOC106607273 coding downstream 135669 36551021 ~ 36582092 (+)
LOC110486244 LOC106607274 coding downstream 206785 36632446 ~ 36664344 (+)
LOC110486247 LOC106607277 coding downstream 246647 36672308 ~ 36677819 (+)
G1169315 NA non-coding upstream 66902 36306456 ~ 36306664 (+)
G1169286 NA non-coding upstream 106661 36266470 ~ 36266905 (+)
G1169247 NA non-coding upstream 163445 36209485 ~ 36210121 (+)
G1169194 NA non-coding upstream 261134 36112232 ~ 36112432 (+)
G1169192 NA non-coding upstream 263091 36110249 ~ 36110475 (+)
G1169444 NA non-coding downstream 77075 36502736 ~ 36503327 (+)
G1169371 NA non-coding downstream 79969 36505630 ~ 36507309 (+)
G1169489 NA non-coding downstream 144004 36569665 ~ 36569882 (+)
G1169208 NA other upstream 201995 36169896 ~ 36171571 (+)
G1169207 NA other upstream 205235 36167628 ~ 36168331 (+)
G1169121 LOC106607257 other upstream 380966 35989856 ~ 35992600 (+)
LOC110486188 LOC107665142 other upstream 1685916 34680909 ~ 34687670 (+)
G1169532 LOC106607276 other downstream 244698 36670359 ~ 36671403 (+)
G1169542 NA other downstream 276611 36702272 ~ 36703736 (+)
G1169468 hsp70b other downstream 345127 36743291 ~ 36819540 (+)
G1169472 NA other downstream 359151 36784812 ~ 36812201 (+)

Expression


Co-expression Network