G1170962


Basic Information

Item Value
gene id G1170962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36543723 ~ 36544857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1335350
CTAGCTCATCTGGGTGTGTGAGCTGACAGCTAGCACATGGACAAGCAGTAATGCAGTAGTTAGACATGACACGAATTACCACCACAGCTGGATCCATATATCTTTGCACTACACaaacctttatgacaacagtcaGCCCTAAAATGATAGCTACCATTATTAGCTAGCATTTCAGAGTTAAAacaagctactgtagctagctaaaatgAGCTAGCAGGAATTGTAGCTGGCCAGGTCGTAGTTGCATCATATTAAACCGGTTGCCTGGTTTGCGAATGGCAACGCTAACCGTTTGGCTAGTTAGCAAGCTAAATACATGGCTCCGAGTATGGCTAGCACTGACAGGAGTATGGGTTAAAGTTATTTAAATTCACCCTCACAATGCTTTAACTTCGTCAACATCTTGCCAGTTAGCAACATTAGCGAAGCCAGCTGCAGTCACATATTGACTACATAGCAACATGACATCATTTATTCTATTTGGAGGCAGCGGAAACGCAATTTCAGCTTGCCCACCAAGGACAGTCCAACCTGGGTTGACTTCAAAGTGCCAATGGAAACCGGTcttttgtaataaaaaaaaaactggccTAGCTATATGTTTGGAGTGGGCAGTCTGGAACCAGAGGATAACAAAGAGCAGTTATGTCTAGAGGTAGCTTGTCAGTCGTTGAAAGATTCTGAGGGCATTCCTACCAAACCAATATCCTCATAGCTCTAGCCATGTTTCTGGTTATCCTCCCAACACCCAGACACATTGGATGTGAGTTTCTGATCCAAACCTATCTTCCTGATCCTTCAGTAAAAGGTCATACTAGTCCATTGGGAACCTTGTATCCAGTGAGCCCTAGTTTCATGTAGTCCATACAGTGTATCAGGAGCCTAATCTGTAAACAGCAGTGGTTCTATTATGTAATCCTCCCTGTAATGCTGGGTGGTCTTTAGCACATGGGCCTGGGGACAGCAGGGAATGTACTGACGCTCATctgtggtgatgtgtgtgtgggtgtgtgtttatttgtgtgtttgaCAAAGGCTGTTGTGAGTGGGTTTGGGAACGTCGTGGGGAAGGTTCTTCCCAGACCCTGTGGTGGTtgggctctctccctctctctgcagctccaatcgggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1335350 True 1135 lncRNA 0.46 1 36543723 36544857

Neighbor

gene id symbol gene type direction distance location
LOC110486239 LOC106607271 coding downstream 20963 36505619 ~ 36522760 (-)
LOC118938608 NA coding downstream 27046 36516541 ~ 36516677 (-)
LOC110486237 LOC106601002 coding downstream 100685 36413019 ~ 36470174 (-)
LOC110486236 star3 coding downstream 131227 36397822 ~ 36412496 (-)
LOC110486235 LOC106607388 coding downstream 146026 36389870 ~ 36397697 (-)
LOC110486242 NA coding upstream 76230 36621087 ~ 36628399 (-)
LOC110486245 LOC106607276 coding upstream 120288 36665145 ~ 36671427 (-)
LOC110486248 LOC106607280 coding upstream 135608 36680465 ~ 36684617 (-)
LOC110486249 LOC106607278 coding upstream 143302 36688159 ~ 36692640 (-)
LOC110486250 LOC106607281 coding upstream 148323 36693180 ~ 36722611 (-)
G1171006 NA non-coding downstream 40324 36502714 ~ 36503399 (-)
G1171001 NA non-coding downstream 48009 36495500 ~ 36495714 (-)
G1170937 NA non-coding downstream 51439 36419262 ~ 36492284 (-)
G1171039 NA non-coding upstream 27380 36572237 ~ 36572450 (-)
G1171040 NA non-coding upstream 28184 36573041 ~ 36573578 (-)
G1171042 NA non-coding upstream 32213 36577070 ~ 36578235 (-)
G1171049 NA non-coding upstream 47310 36592167 ~ 36592449 (-)
G1171056 NA non-coding upstream 65907 36610764 ~ 36611047 (-)
G1170998 NA other downstream 50199 36493089 ~ 36493524 (-)
G1170826 NA other downstream 433284 36110102 ~ 36110439 (-)
G1170811 NA other downstream 452306 36090762 ~ 36091417 (-)
LOC110485158 LOC106607258 other downstream 542775 35995257 ~ 36000992 (-)
G1170691 rl19 other downstream 679079 35862152 ~ 35864644 (-)
G1171050 NA other upstream 49197 36594054 ~ 36594526 (-)
G1171051 NA other upstream 50975 36595832 ~ 36596641 (-)
G1171057 hsp70b other upstream 199915 36665169 ~ 36828425 (-)
G1171149 NA other upstream 339161 36884018 ~ 36884340 (-)
G1171337 NA other upstream 653371 37198228 ~ 37198640 (-)

Expression


Co-expression Network