G1169468 (hsp70b)


Basic Information

Item Value
gene id G1169468
gene name hsp70b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36743291 ~ 36819540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1333656
AAacatatttaaatacattttatttacaaTGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTCCTCTTTGTCGCCCAGCTGGTTGTTCTCC
>TU1333658
AAacatatttaaatacattttatttacaaTGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCT
>TU1333664
AAacatatttaaatacattttatttacaaTGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTGGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTC
>TU1333665
AAacatatttaaatacattttatttacaaTGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTCCTCTTTGTCGCCCAGCTGGTTGTTCTCC
>TU1333667
AAacatatttaaatacattttatttacaaTGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTGGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTC
>TU1333663
GAAacatatttaaatacattttatttgcaatGTCCAGCAATGCAATATGGTATGAAGCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGGATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCT
>TU1333662
AGAAacatatttaaatacattttatttgcaatGTCCAGCAATGCAATATGGTATGAAGCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGGATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTCCTCTTTGTCGCCCAGCTGGTTGTTCTCC
>TU1333659
AGAAacatatttaaatacattttatttgcaatGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAATCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTGGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTC
>TU1333668
ATATTTCATGGTATTGTGTAAAAAATGTGAATAATCAATGTGTTATGATGAGAAGGAATTCAAGAAAACAGCCAACAGACCTAGAAacatatttaaatacattttatttgcaatGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCCCCTCCCTGCTGGTACAGCTTAGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTCCTCTTTGTCGCCCAGCTGGTTGTTCTCC
>TU1333669
ctttttttttttttttacatatttaaatacattttatttgcaatGTCCAGCAATGCAATATGGTATGAATCAACAGATGTACAGTGTGTTTTTACAAGTACAAAGTATTTCCTGAATAGTAAATTGTATGCAGTGATACTAATGCATTTTGAAAAGTCCTTTATAAAAATCCCTCACTTTAGTCAATCTCTTCAATGGTTGGGCCTTGGGAGCTGTCACCAGAGCTGGTCCGTGCCTGATCTCCACAGCAACCTGTGGGCATCCCTCCCTGCTGGTACAGCTTGGTAATGATAGGCTGGCATACTTTCTCCAGCTCCTTTAGCTGATGCTCATACTCCTCTTTGTCGCCCAGCTGGTTGTTCTCCAACCAGGAAATGGTCTGGTCGCACCTGTCCACCACTTTCTTTTTGTCCTCCTGGCTGATCTTGCCTTTCATGTTGTCGTCCTCCACGCTGCTCTTCATATTGAAGGCGTACAACTCCAGGGAGTTCTTGGCAGCTATCTTCTCCCTCTGTGCGTCATCCTCAGCTTTGTATTTGTCAGCGTCCTGCACCATCCTCTCAATATCCTCTTTGCTGAGCCGGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTCTTTGCCCGTGCTCTTGTCCACCGCTGATACGTTCAGAATGCCGTTGGCGTCGATGTCAAAGGTCACCTCGATCTGAGGGACTCCTCGTGGGGCAGGGTGGATCCCAGAGAGCTCAAACTTCCccaggaggttgttgtccttggtcatggctctctctccctcgtagACCTGGATCATGACCCCGGGCTGGTTGTCGGAGTAAGTGGTGAAGGTCTGGGTCTGTTTGGATGGGATGGTGGTGTTGAGTTTGATCAGGGCGGTCATGACCCCTCCGGCGGTTTCGATGCCCAGGGACAGGGGAGCCACATCCAGCAGCAGCAGGTCCTGGACGTTCTCAGACTTGTCGCCAGACAAGATGGCCGCCTGGATGGCAGCGCCGTAGGCCACCGCCTCGTCTGGGTTGATGCTCTTGTTTAGCTCTCGGCCGTTGAAAAAGTCCTGCAGGAGCTTCTGGACCTTGGGGATCCGGGTGGAGCCTCCGACCAGGACGACGTCGTGAATTTGGGCCTTGTCCATCTTGGCATCCCCGAGGGCTTTCTCCACAGGCTCCAGGGTTCCCCTGAAGAGGTCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1333656 False 351 lncRNA 0.41 2 36743291 36806200
TU1333658 False 283 lncRNA 0.39 2 36743291 36806132
TU1333664 False 320 lncRNA 0.40 3 36743291 36818688
TU1333665 False 349 lncRNA 0.42 3 36743291 36806200
TU1333667 False 321 lncRNA 0.40 3 36743291 36818688
TU1333663 False 284 lncRNA 0.40 2 36750222 36806132
TU1333662 False 353 lncRNA 0.42 2 36757104 36806200
TU1333659 False 324 lncRNA 0.40 2 36763976 36818688
TU1333668 False 433 TUCP 0.40 2 36770788 36806200
TU1333669 True 1189 TUCP 0.52 2 36815447 36819540

Neighbor

gene id symbol gene type direction distance location
LOC110487537 LOC106601013 coding upstream 55786 36685096 ~ 36687505 (+)
LOC110486247 LOC106607277 coding upstream 65472 36672308 ~ 36677819 (+)
LOC110486244 LOC106607274 coding upstream 78947 36632446 ~ 36664344 (+)
LOC110486241 LOC106607273 coding upstream 161199 36551021 ~ 36582092 (+)
LOC110486240 LOC106601006 coding upstream 195348 36525639 ~ 36547943 (+)
LOC110486255 LOC106607286 coding downstream 31382 36850070 ~ 36854713 (+)
LOC118938285 NA coding downstream 358818 37177506 ~ 37178602 (+)
LOC110486264 LOC106601026 coding downstream 639546 37458234 ~ 37479500 (+)
LOC110487538 LOC106607392 coding downstream 746943 37565631 ~ 37567727 (+)
LOC110486266 LOC106607393 coding downstream 762060 37580748 ~ 37586162 (+)
G1169538 NA non-coding upstream 48881 36693189 ~ 36694410 (+)
G1169506 NA non-coding upstream 126535 36616471 ~ 36616756 (+)
G1169504 NA non-coding upstream 133848 36609178 ~ 36609443 (+)
G1169499 NA non-coding upstream 148113 36594721 ~ 36595178 (+)
G1169498 NA non-coding upstream 148826 36594010 ~ 36594465 (+)
G1169469 hsp70b non-coding downstream 906 36819594 ~ 36828535 (+)
G1169482 LOC106607288 non-coding downstream 37202 36855890 ~ 36862973 (+)
G1169577 LOC106607288 non-coding downstream 50461 36869149 ~ 36869517 (+)
G1169578 NA non-coding downstream 51079 36869767 ~ 36870171 (+)
G1169581 NA non-coding downstream 54461 36873149 ~ 36873369 (+)
G1169542 NA other upstream 39555 36702272 ~ 36703736 (+)
G1169532 LOC106607276 other upstream 71888 36670359 ~ 36671403 (+)
LOC110486232 rprml other upstream 403935 36338066 ~ 36339755 (+)
G1169208 NA other upstream 571720 36169896 ~ 36171571 (+)
LOC110485168 LOC106601036 other downstream 824410 37638974 ~ 37646678 (+)
G1170195 NA other downstream 1203161 38021849 ~ 38022521 (+)
G1170288 NA other downstream 1390547 38209235 ~ 38209521 (+)
G1170322 NA other downstream 1443726 38262414 ~ 38262853 (+)
G1170455 NA other downstream 1771084 38589772 ~ 38590707 (+)
G1169564 NA non-coding upstream 15569 36747799 ~ 36755219 (+)
G1169562 NA non-coding upstream 16985 36746575 ~ 36753803 (+)

Expression


Co-expression Network