G1171122


Basic Information

Item Value
gene id G1171122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36754229 ~ 36762017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1335609
tacctgaatttatttgtccaatagaaactttcGAAACGTTTTGCAACTATTTGGACTAAAGATTACAccccagatcagctagatgcaggcaagagtgtgcaagatgGGATTGAATGTGTCTCTGCCTGTCACCTTGATCActccaatttgtctctcgacctgtgcacctacggtATAAACTTTCATTTCTAGGCTATAGGTTGTAGCAATCTCTTGATTGGTATAGGGAAATTTGAgtgtcatgtagtagcctaaacctattgatgtgacattgagctgggtgaatgggaatatgaatgacagtcatccaatatgctataaTCGAAATAAGGCCATGGTAATAAAACGAAATCCTCCATAATCTTGAACGGCACtgctgtgtatatagtgtgaaggGTGTCCTCATCTAGTAGTTGCATTCTGATATGGTAAGGCAACTTAAAGTGCGTGAAATCATAGTATTTtactgtcagccattgttgccattaatgctCAATCAgaccaggagaggagggagattaatgagccaattgtcaACTgcggattattaggtgaccgtgatggtttgaagGTCAAATTGGGAATTTaaccaggacaccggggttaacacccctactcttacaataagtgccatgggatctttaatgacctcagagagtcaggacacccgtttaacgtcccatctgaaagatggcaccctacacatggcaatgtccccaatcactgccctggggcattaagattttaaaaaattagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatctagggactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtaagcTGCTGgcgaaataaggtatttctg
>TU1335610
tacctgaatttatttgtccaatagaaactttcGAAACGTTTTGCAACTATTTGGACTAAAGATTACAccccagatcagctagatgcaggcaagagtgtgcaagatgGGATTGAATGTGTCTCTGCCTGTCACCTTGATCActccaatttgtctctcgacctgtgcacctacggtATAAACTTTCATTTCTAGGCTATAGGTTGTAGCAATCTCTTGATTGGTATAGGGAAATTTGAgtgtcatgtagtagcctaaacctattgatgtgacattgagctgggtgaatgggaatatgaatgacagtcatccaatatgctataaTCGAAATAAGGCCATGGTAATAAAACGAAATCCTCCATAATCTTGAACGGCACtgctgtgtatatagtgtgaaggGTGTCCTCATCTAGTAGTTGCATTCTGATATGGTAAGGCAACTTAAAGTGCGTGAAATCATAGTATTTtactgtcagccattgttgccattaatgctCAATCAgaccaggagaggagggagattaatgagccaattgtcaACTgcggattattaggtgaccgtgatggtttgaagGTCAAATTGGGAATTTaaccaggacaccggggttaacacccctactcttacaataagtgccatgggatctttaatgacctcagagagtcaggacacccgtttaacgtcccatctgaaagatggcaccctacacatggcaatgtccccaatcactgccctggggcattaagattttaaaaaattagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatctagggactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtaagcTGCTGgcgaaataaggtatttctg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1335609 False 916 lncRNA 0.44 2 36754229 36762017
TU1335610 True 916 lncRNA 0.44 2 36754229 36762017

Neighbor

gene id symbol gene type direction distance location
LOC118938280 hsp70b coding downstream 892 36750225 ~ 36760370 (-)
LOC110512845 hsp70b coding downstream 7771 36743294 ~ 36746458 (-)
LOC110486258 NA coding downstream 16724 36734571 ~ 36737505 (-)
LOC118938070 LOC106601019 coding downstream 18511 36733118 ~ 36735718 (-)
LOC110486251 cn37 coding downstream 22022 36726699 ~ 36732207 (-)
LOC118938277 hsp70b coding upstream 1964 36763981 ~ 36767309 (-)
LOC118938282 hsp70b coding upstream 8858 36770875 ~ 36774178 (-)
LOC118938279 hsp70b coding upstream 15917 36777934 ~ 36788050 (-)
hsp70b hsp70b coding upstream 22797 36784814 ~ 36788029 (-)
LOC110486257 hsp70b coding upstream 29893 36791910 ~ 36795238 (-)
G1171116 LOC106601019 non-coding downstream 19654 36733256 ~ 36734575 (-)
G1171101 LOC106607274 non-coding downstream 97132 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 143182 36610764 ~ 36611047 (-)
G1171049 NA non-coding downstream 161780 36592167 ~ 36592449 (-)
G1171042 NA non-coding downstream 175994 36577070 ~ 36578235 (-)
G1171132 NA non-coding upstream 68903 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 69239 36831256 ~ 36831589 (-)
G1171068 NA non-coding upstream 93860 36855877 ~ 36856985 (-)
LOC110485161 LOC106607288 non-coding upstream 95422 36857430 ~ 37073395 (-)
G1171139 NA non-coding upstream 105954 36867971 ~ 36868185 (-)
G1171051 NA other downstream 157588 36595832 ~ 36596641 (-)
G1171050 NA other downstream 159703 36594054 ~ 36594526 (-)
G1170998 NA other downstream 260705 36493089 ~ 36493524 (-)
G1170826 NA other downstream 643790 36110102 ~ 36110439 (-)
G1170811 NA other downstream 662812 36090762 ~ 36091417 (-)
G1171149 NA other upstream 122001 36884018 ~ 36884340 (-)
G1171337 NA other upstream 436211 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2418757 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2486135 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 2566199 39328216 ~ 39331966 (-)

Expression


Co-expression Network