G1169583 (LOC106607288)


Basic Information

Item Value
gene id G1169583
gene name LOC106607288
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36875417 ~ 36875976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1333793
ACATCAAcagaaaaaggagagaaaaatTGAAAGAAAGATCATCTACACAGAGTGAATATTGGTAGGTTTCTGTTcttcccttttctccctctcactATCAGTTAACTTACTCGTTGCCTCCATCGGGCCTGTGTCCATGAGTGCGGGGAGGGTCTCAGTGGGAAGTGTAACAGTCGCAGCAGTCTTAGCCCTCTCCCTGTCCCGTTCTCGGTCTCGTTCCcggtctctctccctgcctgtggACGTGGCTTCCCCAAGTCGACGCTGACGGTTCTTCTGGGCCTCCATGGCTTTCAGCTTCCGGGCATGTTTATGCCCCTTATAGTGTGCTTCTGCCTGGTTCTGGAAGGGACCCCACAGAGAGCAGAAACACCACAGGAAGGTTAGCAGTAGCACTTATCCATATATTGCTGTAAGACATGCACTTTTAAAAACACTCAAATATACAGTACCTCTGCAAAAAATTTCATTTtcatctttacacacacacacacacacacacacacacacacacacacaagacctgggttcaaatactatttaggaCATTTCAGTTACTT
>TU1333794
ACATCAAcagaaaaaggagagaaaaatTGAAAGAAAGATCATCTACACAGAGTGAATATTGGTAGGTTTCTGTTcttcccttttctccctctcactATCAGTTAACTTACTCGTTGCCTCCATCGGGCCTGTGTCCATGAGTGCGGGGAGGGTCTCAGTGGGAAGTGTAACAGTCGCAGCAGTCTTAGCCCTCTCCCTGTCCCGTTCTCGGTCTCGTTCCcggtctctctccctgcctgtggACGTGGCTTCCCCAAGTCGACGCTGACGGTTCTTCTGGGCCTCCATGGCTTTCAGCTTCCGGGCATGTTTATGCCCCTTATAGTGTGCTTCTGCCT
>TU1333791
CTCCATCGGGCCTGTGTCCATGAGTGCGGGGAGGGTCTCAGTGGGAAGTGTAACAGTCGCAGCAGTCTTAGCCCTCTCCCTGTCCCGTTCTCGGTCTCGTTCCcggtctctctccctgcctgtggACGTGGCTTCCCCAAGTCGACGCTGACGGTTCTTCTGGGCCTCCATGGCTTTCAGCTTCCGGGCATGTTTATGCCCCTTATAGTGTGCTTCTGCCT
>TU1333792
CTCCATCGGGCCTGTGTCCATGAGTGCGGGGAGGGTCTCAGTGGGAAGTGTAACAGTCGCAGCAGTCTTAGCCCTCTCCCTGTCCCGTTCTCGGTCTCGTTCCcggtctctctccctgcctgtggACGTGGCTTCCCCAAGTCGACGCTGACGGTTCTTCTGGGCCTCCATGGCTTTCAGCTTCCGGGCATGTTTATGCCCCTTATAGTGTGCTTCTGCCTGGTTCTGGAAGGGACCCCACAGAGAGCAGAAACACCACAGGAAGGTTAGCAGTAGCACTTATCCATATATTGCTGTAAGACATGCACTTTTAAAAACACTCAAATATACAGTACCTCTGCAAAAAATTTCATTTtcatctttacacacacacacacacacacacacacacacacacacacaagacctgggttcaaatactatttaggaCATTTCAGTTACTT

Function

NR:

description
PREDICTED: zinc finger protein 385C-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1333793 False 560 lncRNA 0.47 1 36875417 36875976
TU1333794 False 338 lncRNA 0.52 1 36875417 36875754
TU1333791 False 221 lncRNA 0.60 1 36875534 36875754
TU1333792 True 443 lncRNA 0.50 1 36875534 36875976

Neighbor

gene id symbol gene type direction distance location
LOC110486255 LOC106607286 coding upstream 20704 36850070 ~ 36854713 (+)
LOC110487537 LOC106601013 coding upstream 187912 36685096 ~ 36687505 (+)
LOC110486247 LOC106607277 coding upstream 197598 36672308 ~ 36677819 (+)
LOC110486244 LOC106607274 coding upstream 211073 36632446 ~ 36664344 (+)
LOC110486241 LOC106607273 coding upstream 293325 36551021 ~ 36582092 (+)
LOC118938285 NA coding downstream 301530 37177506 ~ 37178602 (+)
LOC110486264 LOC106601026 coding downstream 582258 37458234 ~ 37479500 (+)
LOC110487538 LOC106607392 coding downstream 689655 37565631 ~ 37567727 (+)
LOC110486266 LOC106607393 coding downstream 704772 37580748 ~ 37586162 (+)
LOC110485165 LOC106600980 coding downstream 742111 37618087 ~ 37619016 (+)
G1169581 NA non-coding upstream 2048 36873149 ~ 36873369 (+)
G1169578 NA non-coding upstream 5246 36869767 ~ 36870171 (+)
G1169577 LOC106607288 non-coding upstream 5900 36869149 ~ 36869517 (+)
G1169482 LOC106607288 non-coding upstream 12444 36855890 ~ 36862973 (+)
G1169469 hsp70b non-coding upstream 46882 36819594 ~ 36828535 (+)
G1169585 NA non-coding downstream 1425 36877401 ~ 36877601 (+)
G1169586 NA non-coding downstream 3554 36879530 ~ 36879735 (+)
G1169587 NA non-coding downstream 4198 36880174 ~ 36880373 (+)
G1169588 NA non-coding downstream 5763 36881739 ~ 36882029 (+)
G1169589 NA non-coding downstream 7311 36883287 ~ 36883525 (+)
G1169468 hsp70b other upstream 55877 36743291 ~ 36819540 (+)
G1169472 NA other upstream 63216 36784812 ~ 36812201 (+)
G1169476 NA other upstream 75449 36791911 ~ 36799968 (+)
G1169542 NA other upstream 171681 36702272 ~ 36703736 (+)
G1169532 LOC106607276 other upstream 204014 36670359 ~ 36671403 (+)
LOC110485168 LOC106601036 other downstream 767122 37638974 ~ 37646678 (+)
G1170195 NA other downstream 1145873 38021849 ~ 38022521 (+)
G1170288 NA other downstream 1333259 38209235 ~ 38209521 (+)
G1170322 NA other downstream 1386438 38262414 ~ 38262853 (+)
G1170455 NA other downstream 1713796 38589772 ~ 38590707 (+)

Expression


Co-expression Network