G1171488


Basic Information

Item Value
gene id G1171488
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37605564 ~ 37606416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336006
ttgtatgatatgctatgaattgcaatttgtacaatatgttcaGAATTTGCCATACgtatatgttatgaattccaattggttgtggctaacgttagctaggtgggtAGGTGGCTtacgctaatgttagctaggctagggttaaggttaggagttatgttaagggttagctaacatgctaagtagttgcaaagtagctaaaatactaatgtccgtgatgagattcaaacacgcaacctttgggttactaggCGTCAGCGGTGTATACCAATCCATCCACCCCTATCAACCACCCtcctttcgtttttgccttaagtaaccttccgTCTTATTTAGCCACACCAAACGTAACAAATCATACTAATTCTAGTGTCCCGGATAttcatttactatgttacatctagtctattaGACCAGCCTGGGAATCTTTAGTGTCCTTCTAGTCAAGCGACAAAGCTTCATCCTCAAGTTGTCTTGTGAAATAAAACGACAGACTGCCTTATCTATGAGGACTGAGGACACAGTGTTGAGTAATGCCATTCATATTCATCTGGTAAAAGTCTAAATCCTAGTGGATCCCACTAGAAGGAATTCTAGGGAATCTACCTGCCTGTACACATGGTCTGTTTTTATTACATCACTGTCATTCTAGTAGAAATGTGATGGTTAACAGAGTAGTTTAGCATGCACCTCCTAGCAGCACACCTTGACACATGCAGACCATCCATAGTCtctgctttatttcagttacTGAACCAAGGGGTTGCACGCGGTGTAATTCCAATTTGTCTTAGGTTGTCAAAGTGTAATCTAGCAAAAATGTACTTATATCACAACATGGTAGCTAAACAACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336006 True 853 lncRNA 0.40 1 37605564 37606416

Neighbor

gene id symbol gene type direction distance location
LOC110486267 LOC106607302 coding downstream 1036 37588948 ~ 37604528 (-)
LOC110486265 LOC106601029 coding downstream 102654 37486500 ~ 37502910 (-)
LOC110486263 LOC106607299 coding downstream 150085 37426664 ~ 37455479 (-)
rbtstat3 LOC106607297 coding downstream 180148 37398223 ~ 37425416 (-)
stat5 stat5 coding downstream 210263 37293710 ~ 37395301 (-)
LOC110486268 LOC106607304 coding upstream 2848 37609264 ~ 37617259 (-)
LOC110485166 LOC106607305 coding upstream 22086 37628502 ~ 37631611 (-)
LOC110486270 LOC106601037 coding upstream 40681 37647097 ~ 37651150 (-)
LOC110486271 LOC106607308 coding upstream 142189 37748605 ~ 37771147 (-)
LOC110486276 LOC106601043 coding upstream 263258 37869674 ~ 37874854 (-)
G1171519 NA non-coding downstream 7115 37597955 ~ 37598449 (-)
G1171517 NA non-coding downstream 26767 37578587 ~ 37578797 (-)
G1171514 NA non-coding downstream 30552 37574773 ~ 37575012 (-)
G1171494 NA non-coding downstream 59105 37546248 ~ 37546459 (-)
G1171493 NA non-coding downstream 60393 37544800 ~ 37545171 (-)
G1171523 NA non-coding upstream 8865 37615281 ~ 37615567 (-)
G1171526 NA non-coding upstream 13213 37619629 ~ 37619962 (-)
G1171531 NA non-coding upstream 19703 37626119 ~ 37626353 (-)
G1171533 NA non-coding upstream 21959 37628375 ~ 37798946 (-)
G1171581 NA non-coding upstream 122050 37728466 ~ 37735769 (-)
G1171337 NA other downstream 406924 37198228 ~ 37198640 (-)
G1171149 NA other downstream 721224 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 777139 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1008923 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1011038 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1574358 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1641736 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1721800 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2317506 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2709702 40316118 ~ 40316859 (-)

Expression


Co-expression Network