G1171533


Basic Information

Item Value
gene id G1171533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37628375 ~ 37798946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336069
agagagagggagagagagcgagacagagagagagacagacagagagagagagagggagagagatgggaagttTAAAGGCGAGGCAGATTTTCGGTTTCAGTGTCTGAGGCTTCACTGGATGTCATTAGCTGCATATTCACTGATACATACAAGCATTATGGTAATATTTACTCAACATGGCGGACTGACAGCTTGCTTTAGAATGAAGTTGATTGGGTGAGTGAGTGACTTGGCTTCTTagcattgtgtgtttgtgtgtgtgtgggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgtgttgtcTTGACTAGCAGGATTATTTTCTTGATCTTGTCCATTTCGTTTGTCTTTTGAATTGAAAAGGGATTTCGTTACCACG
>TU1336053
gagagagagagacagagaaagacagagagagagagagagagagagagagagggagagagagggagagagatgggaagttTAAAGGCGAGGCAGATTTTCGGTTTCAGTGTCTGAGGCTTCACTGGATGTCATTAGCTGCATATTCACTGATACATACAAGCATTATGGTAATATTTACTCAACATGGCGGACTGACAGCTTGCTTTAGAATGAAGTTGATTGGGTGAGTGAGTGACTTGGCTTCTTagcattgtgtgtttgtgtgtgtgtgggagtgtgtgtgtgggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgactgtgtgtgttggtgtattTGAGTGTTTGCATCAGAGCATGCGCCGTGCCATTGCTACATTGTTGTTTTTCTGTTATTCTGTGCTACAGCCAATGACAGATATTTTACTCAGCAGACAATGAGATTGCATTATGTAGGGAGGGGAGCCTCTGTAGAGATGATGAGAAGAACAAACAGCTTGTAAATGAAATCTATGCTATGTTTGTCTATCTAATTTTATCTTTTTGAATTGttgaatacatttaaataataaatGGGATTTTTGGAG
>TU1336058
gagagagagagacagagaaagacagagagagagagagagagagagagagagggagagagagggagagagatgggaagttTAAAGGCGAGGCAGATTTTCGGTTTCAGTGTCTGAGGCTTCACTGGATGTCATTAGCTGCATATTCACTGATACATACAAGCATTATGGTAATATTTACTCAACATGGCGGACTGACAGCTTGCTTTAGAATGAAGTTGATTGGGTGAGTGAGTGACTTGGCTTCTTagcattgtgtgtttgtgtgtgtgtgggagtgtgtgtgtgggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgactgtgtgtgttggtgtattTGAGTGTTTGCATCAGAGCATGCGCCGTGCCATTGCTACATTGTTGTTTTTCTGTTATTCTGTGCTACAGCCAATGACAGATATTTTACTCAGCAGACAATGAGATTGCATTATGTAGGGAGGGGAGCCTCTGTAGAGATGATGAGAAGAACAAACAGCTTGTAAATGAAATCTATGCTATGTTTGTCTATCTAATTTTATCTTTTTGAATTGttgaatacatttaaataataaatGGGATTTTTGGAG
>TU1336059
ttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgactgtgtgtgttggtgtattTGAGTGTTTGCATCAGAGCATGCGCCGTGCCATTGCTACATTGTTGTTTTTCTGTTATTCTGTGCTACAGCCAATGACAGATATTTTACTCAGCAGACAATGAGATTGCATTATGTAGGGAGGGGAGCCTCTGTAGAGATGATGAGAAGAACAAACAGCTTGTAAATGAAATCTATGCTATGTTTGTCTATCTAATTTTATCTTTTTGAATTGttgaatacatttaaataataaatGGGATTTTTGGAG
>TU1336064
GTGGATATTACGGTACGTGTGTTTTTGTGAGAATGTGAATGTTTATgcaataacgtgtgtgtgtgtgtgtgtgtgttgtgtgtgactgtgtgtgttggtgtattTGAGTGTTTGCATCAGAGCATGCGCCGTGCCATTGCTACATTGTTGTTTTTCTGTTATTCTGTGCTACAGCCAATGACAGATATTTTACTCAGCAGACAATGAGATTGCATTATGTAGGGAGGGGAGCCTCTGTAGAGATGATGAGAAGAACAAACAGCTTGTAAATGAAATCTATGCTATGTTTGTCTATCTAATTTTATCTTTTTGAATTGttgaatacatttaaataataaatGGGATTTTTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336069 False 440 lncRNA 0.45 4 37628375 37748497
TU1336053 False 611 lncRNA 0.42 2 37747537 37748196
TU1336058 False 601 lncRNA 0.42 2 37747537 37748196
TU1336059 False 358 lncRNA 0.39 2 37747537 37771854
TU1336064 True 353 lncRNA 0.37 2 37747537 37798946

Neighbor

gene id symbol gene type direction distance location
LOC110486268 LOC106607304 coding downstream 11116 37609264 ~ 37617259 (-)
LOC110486267 LOC106607302 coding downstream 23847 37588948 ~ 37604528 (-)
LOC110486265 LOC106601029 coding downstream 125465 37486500 ~ 37502910 (-)
LOC110486263 LOC106607299 coding downstream 172896 37426664 ~ 37455479 (-)
rbtstat3 LOC106607297 coding downstream 202959 37398223 ~ 37425416 (-)
LOC110486276 LOC106601043 coding upstream 70728 37869674 ~ 37874854 (-)
LOC110485169 LOC106607314 coding upstream 105147 37904093 ~ 37939039 (-)
LOC110486284 LOC106601139 coding upstream 206990 38005936 ~ 38022314 (-)
LOC110486285 LOC106607319 coding upstream 245097 38043339 ~ 38052087 (-)
LOC110486281 LOC106601133 coding upstream 278379 38077325 ~ 38133730 (-)
G1171531 NA non-coding downstream 2022 37626119 ~ 37626353 (-)
G1171526 NA non-coding downstream 8413 37619629 ~ 37619962 (-)
G1171523 NA non-coding downstream 12808 37615281 ~ 37615567 (-)
G1171488 NA non-coding downstream 21959 37605564 ~ 37606416 (-)
G1171519 NA non-coding downstream 29926 37597955 ~ 37598449 (-)
G1171644 LOC106601042 non-coding upstream 47488 37846434 ~ 37847693 (-)
G1171659 NA non-coding upstream 66160 37865106 ~ 37865805 (-)
G1171663 NA non-coding upstream 69643 37868589 ~ 37869588 (-)
G1171671 NA non-coding upstream 100672 37899618 ~ 37899934 (-)
G1171720 LOC106607318 non-coding upstream 230149 38029095 ~ 38034875 (-)
G1171337 NA other downstream 429735 37198228 ~ 37198640 (-)
G1171149 NA other downstream 744035 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 799950 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1031734 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1033849 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1381828 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1449206 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1529270 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2124976 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2517172 40316118 ~ 40316859 (-)

Expression


Co-expression Network